Gene : Medtr8g080020 M. truncatula Mt4.0v1
Defline:  (1 of 3) PF09588 - YqaJ-like viral recombinase domain (YqaJ) Description:  type II-like restriction endonuclease, putative
Genomic Order:  4196 Name:  ? Medtr8g080020
Secondary Identifier:  ? PAC:31070316
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g080020 0.5kb upstream 0.5kb upstream 2000   true chr8: 34358747-34360746 Medicago truncatula
Medtr8g080020 0.5kb upstream 0.5kb upstream 500   false chr8: 34360247-34360746 Medicago truncatula
Medtr8g080020 0.5kb downstream 0.5kb downstream 2000   true chr8: 34358247-34360246 Medicago truncatula
Medtr8g080020 0.5kb downstream 0.5kb downstream 500   false chr8: 34358247-34358746 Medicago truncatula
Medtr8g080020 1.0kb upstream 1.0kb upstream 2500   true chr8: 34358747-34361246 Medicago truncatula
Medtr8g080020 1.0kb upstream 1.0kb upstream 1000   false chr8: 34360247-34361246 Medicago truncatula
Medtr8g080020 1.0kb downstream 1.0kb downstream 2500   true chr8: 34357747-34360246 Medicago truncatula
Medtr8g080020 1.0kb downstream 1.0kb downstream 1000   false chr8: 34357747-34358746 Medicago truncatula
Medtr8g080020 2.0kb upstream 2.0kb upstream 3500   true chr8: 34358747-34362246 Medicago truncatula
Medtr8g080020 2.0kb upstream 2.0kb upstream 2000   false chr8: 34360247-34362246 Medicago truncatula
Medtr8g080020 2.0kb downstream 2.0kb downstream 3500   true chr8: 34356747-34360246 Medicago truncatula
Medtr8g080020 2.0kb downstream 2.0kb downstream 2000   false chr8: 34356747-34358746 Medicago truncatula
Medtr8g080020 5.0kb upstream 5.0kb upstream 6500   true chr8: 34358747-34365246 Medicago truncatula
Medtr8g080020 5.0kb upstream 5.0kb upstream 5000   false chr8: 34360247-34365246 Medicago truncatula
Medtr8g080020 5.0kb downstream 5.0kb downstream 6500   true chr8: 34353747-34360246 Medicago truncatula
Medtr8g080020 5.0kb downstream 5.0kb downstream 5000   false chr8: 34353747-34358746 Medicago truncatula
Medtr8g080020 10.0kb upstream 10.0kb upstream 11500   true chr8: 34358747-34370246 Medicago truncatula
Medtr8g080020 10.0kb upstream 10.0kb upstream 10000   false chr8: 34360247-34370246 Medicago truncatula
Medtr8g080020 10.0kb downstream 10.0kb downstream 11500   true chr8: 34348747-34360246 Medicago truncatula
Medtr8g080020 10.0kb downstream 10.0kb downstream 10000   false chr8: 34348747-34358746 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307470 5265 Fabidae View MSA
124064584 5270 Rosid View MSA
123738180 5271 Pentapetalae View MSA
122790598 5272 Eudicot View MSA
122045989 5273 Angiosperm View MSA
123429076 5275 Viridiplantae View MSA
121346090 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.589        
cufflinks 8.153        
cufflinks 12.407     High High
cufflinks 2.963        
cufflinks 12.367     High High
cufflinks 1.541       Low
cufflinks 3.335        
cufflinks 11.476     High High
cufflinks 3.226        

0 Strain