Gene : Medtr8g081510 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11680//PTHR11680:SF11 - SERINE HYDROXYMETHYLTRANSFERASE Description:  serine transhydroxymethyltransferase
Genomic Order:  4309 Name:  ? Medtr8g081510
Secondary Identifier:  ? PAC:31076406
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-2161 Medicago truncatula pathologic  
Mtruncatula PWY-3841 Medicago truncatula pathologic  
Mtruncatula SER-GLYSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g081510 0.5kb upstream 0.5kb upstream 3680   true chr8: 35166470-35170149 Medicago truncatula
Medtr8g081510 0.5kb upstream 0.5kb upstream 500   false chr8: 35166470-35166969 Medicago truncatula
Medtr8g081510 0.5kb downstream 0.5kb downstream 3680   true chr8: 35166970-35170649 Medicago truncatula
Medtr8g081510 0.5kb downstream 0.5kb downstream 500   false chr8: 35170150-35170649 Medicago truncatula
Medtr8g081510 1.0kb upstream 1.0kb upstream 4180   true chr8: 35165970-35170149 Medicago truncatula
Medtr8g081510 1.0kb upstream 1.0kb upstream 1000   false chr8: 35165970-35166969 Medicago truncatula
Medtr8g081510 1.0kb downstream 1.0kb downstream 4180   true chr8: 35166970-35171149 Medicago truncatula
Medtr8g081510 1.0kb downstream 1.0kb downstream 1000   false chr8: 35170150-35171149 Medicago truncatula
Medtr8g081510 2.0kb upstream 2.0kb upstream 5180   true chr8: 35164970-35170149 Medicago truncatula
Medtr8g081510 2.0kb upstream 2.0kb upstream 2000   false chr8: 35164970-35166969 Medicago truncatula
Medtr8g081510 2.0kb downstream 2.0kb downstream 5180   true chr8: 35166970-35172149 Medicago truncatula
Medtr8g081510 2.0kb downstream 2.0kb downstream 2000   false chr8: 35170150-35172149 Medicago truncatula
Medtr8g081510 5.0kb upstream 5.0kb upstream 8180   true chr8: 35161970-35170149 Medicago truncatula
Medtr8g081510 5.0kb upstream 5.0kb upstream 5000   false chr8: 35161970-35166969 Medicago truncatula
Medtr8g081510 5.0kb downstream 5.0kb downstream 8180   true chr8: 35166970-35175149 Medicago truncatula
Medtr8g081510 5.0kb downstream 5.0kb downstream 5000   false chr8: 35170150-35175149 Medicago truncatula
Medtr8g081510 10.0kb upstream 10.0kb upstream 13180   true chr8: 35156970-35170149 Medicago truncatula
Medtr8g081510 10.0kb upstream 10.0kb upstream 10000   false chr8: 35156970-35166969 Medicago truncatula
Medtr8g081510 10.0kb downstream 10.0kb downstream 13180   true chr8: 35166970-35180149 Medicago truncatula
Medtr8g081510 10.0kb downstream 10.0kb downstream 10000   false chr8: 35170150-35180149 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313594 5265 Fabidae View MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.505       Low
cufflinks 28.628     High  
cufflinks 9.785        
cufflinks 39.042     High  
cufflinks 28.455     High  
cufflinks 5.313       Low
cufflinks 20.806     High  
cufflinks 17.769     High  
cufflinks 49.508     High High

0 Strain