Gene : Medtr8g085380 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13020 - UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAINING Description:  ubiquitin-associated (UBA)/TS-N domain protein
Genomic Order:  4338 Name:  ? Medtr8g085380
Secondary Identifier:  ? PAC:31073144
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g085380 0.5kb upstream 0.5kb upstream 7234   true chr8: 35373232-35380465 Medicago truncatula
Medtr8g085380 0.5kb upstream 0.5kb upstream 500   false chr8: 35373232-35373731 Medicago truncatula
Medtr8g085380 0.5kb downstream 0.5kb downstream 7234   true chr8: 35373732-35380965 Medicago truncatula
Medtr8g085380 0.5kb downstream 0.5kb downstream 500   false chr8: 35380466-35380965 Medicago truncatula
Medtr8g085380 1.0kb upstream 1.0kb upstream 7734   true chr8: 35372732-35380465 Medicago truncatula
Medtr8g085380 1.0kb upstream 1.0kb upstream 1000   false chr8: 35372732-35373731 Medicago truncatula
Medtr8g085380 1.0kb downstream 1.0kb downstream 7734   true chr8: 35373732-35381465 Medicago truncatula
Medtr8g085380 1.0kb downstream 1.0kb downstream 1000   false chr8: 35380466-35381465 Medicago truncatula
Medtr8g085380 2.0kb upstream 2.0kb upstream 8734   true chr8: 35371732-35380465 Medicago truncatula
Medtr8g085380 2.0kb upstream 2.0kb upstream 2000   false chr8: 35371732-35373731 Medicago truncatula
Medtr8g085380 2.0kb downstream 2.0kb downstream 8734   true chr8: 35373732-35382465 Medicago truncatula
Medtr8g085380 2.0kb downstream 2.0kb downstream 2000   false chr8: 35380466-35382465 Medicago truncatula
Medtr8g085380 5.0kb upstream 5.0kb upstream 11734   true chr8: 35368732-35380465 Medicago truncatula
Medtr8g085380 5.0kb upstream 5.0kb upstream 5000   false chr8: 35368732-35373731 Medicago truncatula
Medtr8g085380 5.0kb downstream 5.0kb downstream 11734   true chr8: 35373732-35385465 Medicago truncatula
Medtr8g085380 5.0kb downstream 5.0kb downstream 5000   false chr8: 35380466-35385465 Medicago truncatula
Medtr8g085380 10.0kb upstream 10.0kb upstream 16734   true chr8: 35363732-35380465 Medicago truncatula
Medtr8g085380 10.0kb upstream 10.0kb upstream 10000   false chr8: 35363732-35373731 Medicago truncatula
Medtr8g085380 10.0kb downstream 10.0kb downstream 16734   true chr8: 35373732-35390465 Medicago truncatula
Medtr8g085380 10.0kb downstream 10.0kb downstream 10000   false chr8: 35380466-35390465 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301757 5265 Fabidae View MSA
124061214 5270 Rosid View MSA
123738643 5271 Pentapetalae View MSA
122787724 5272 Eudicot View MSA
122045767 5273 Angiosperm View MSA
121347090 5274 Embryophyte View MSA
123424729 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.517        
cufflinks 11.867     High  
cufflinks 12.395     High High
cufflinks 7.964        
cufflinks 11.366     High  
cufflinks 4.575       Low
cufflinks 7.518        
cufflinks 11.113     High  
cufflinks 8.905        

0 Strain