Gene : Medtr8g086330 M. truncatula Mt4.0v1

Defline:  (1 of 3) PTHR13509:SF2 - PREPROTEIN TRANSLOCASE SEC, SEC61-BETA SUBUNIT PROTEIN-RELATED Description:  protein transporter Sec61 subunit beta-like protein
Genomic Order:  4406 Name:  ? Medtr8g086330
Secondary Identifier:  ? PAC:31071315

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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g086330 0.5kb upstream 0.5kb upstream 2297   true chr8: 35804463-35806759 Medicago truncatula
Medtr8g086330 0.5kb upstream 0.5kb upstream 500   false chr8: 35806260-35806759 Medicago truncatula
Medtr8g086330 0.5kb downstream 0.5kb downstream 2297   true chr8: 35803963-35806259 Medicago truncatula
Medtr8g086330 0.5kb downstream 0.5kb downstream 500   false chr8: 35803963-35804462 Medicago truncatula
Medtr8g086330 1.0kb upstream 1.0kb upstream 2797   true chr8: 35804463-35807259 Medicago truncatula
Medtr8g086330 1.0kb upstream 1.0kb upstream 1000   false chr8: 35806260-35807259 Medicago truncatula
Medtr8g086330 1.0kb downstream 1.0kb downstream 2797   true chr8: 35803463-35806259 Medicago truncatula
Medtr8g086330 1.0kb downstream 1.0kb downstream 1000   false chr8: 35803463-35804462 Medicago truncatula
Medtr8g086330 2.0kb upstream 2.0kb upstream 3797   true chr8: 35804463-35808259 Medicago truncatula
Medtr8g086330 2.0kb upstream 2.0kb upstream 2000   false chr8: 35806260-35808259 Medicago truncatula
Medtr8g086330 2.0kb downstream 2.0kb downstream 3797   true chr8: 35802463-35806259 Medicago truncatula
Medtr8g086330 2.0kb downstream 2.0kb downstream 2000   false chr8: 35802463-35804462 Medicago truncatula
Medtr8g086330 5.0kb upstream 5.0kb upstream 6797   true chr8: 35804463-35811259 Medicago truncatula
Medtr8g086330 5.0kb upstream 5.0kb upstream 5000   false chr8: 35806260-35811259 Medicago truncatula
Medtr8g086330 5.0kb downstream 5.0kb downstream 6797   true chr8: 35799463-35806259 Medicago truncatula
Medtr8g086330 5.0kb downstream 5.0kb downstream 5000   false chr8: 35799463-35804462 Medicago truncatula
Medtr8g086330 10.0kb upstream 10.0kb upstream 11797   true chr8: 35804463-35816259 Medicago truncatula
Medtr8g086330 10.0kb upstream 10.0kb upstream 10000   false chr8: 35806260-35816259 Medicago truncatula
Medtr8g086330 10.0kb downstream 10.0kb downstream 11797   true chr8: 35794463-35806259 Medicago truncatula
Medtr8g086330 10.0kb downstream 10.0kb downstream 10000   false chr8: 35794463-35804462 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314120 5265 Fabidae View MSA
124074304 5270 Rosid View MSA
123751679 5271 Pentapetalae View MSA
122797593 5272 Eudicot View MSA
122044826 5273 Angiosperm View MSA
121346729 5274 Embryophyte View MSA
123426765 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.331       Low
cufflinks 9.383        
cufflinks 7.45        
cufflinks 36.445     High High
cufflinks 7.711        
cufflinks 71.423     High High
cufflinks 9.802        
cufflinks 7.324        
cufflinks 17.507     High  

0 Strain