Gene : Medtr0042s0120 M. truncatula Mt4.0v1
Description:  transposable element protein, putative Genomic Order:  5
Name:  ? Medtr0042s0120 Secondary Identifier:  ? PAC:31101171
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0042s0120 0.5kb upstream 0.5kb upstream 1951   true scaffold0042: 54269-56219 Medicago truncatula
Medtr0042s0120 0.5kb upstream 0.5kb upstream 500   false scaffold0042: 55720-56219 Medicago truncatula
Medtr0042s0120 0.5kb downstream 0.5kb downstream 1951   true scaffold0042: 53769-55719 Medicago truncatula
Medtr0042s0120 0.5kb downstream 0.5kb downstream 500   false scaffold0042: 53769-54268 Medicago truncatula
Medtr0042s0120 1.0kb upstream 1.0kb upstream 2451   true scaffold0042: 54269-56719 Medicago truncatula
Medtr0042s0120 1.0kb upstream 1.0kb upstream 1000   false scaffold0042: 55720-56719 Medicago truncatula
Medtr0042s0120 1.0kb downstream 1.0kb downstream 2451   true scaffold0042: 53269-55719 Medicago truncatula
Medtr0042s0120 1.0kb downstream 1.0kb downstream 1000   false scaffold0042: 53269-54268 Medicago truncatula
Medtr0042s0120 2.0kb upstream 2.0kb upstream 3451   true scaffold0042: 54269-57719 Medicago truncatula
Medtr0042s0120 2.0kb upstream 2.0kb upstream 2000   false scaffold0042: 55720-57719 Medicago truncatula
Medtr0042s0120 2.0kb downstream 2.0kb downstream 3451   true scaffold0042: 52269-55719 Medicago truncatula
Medtr0042s0120 2.0kb downstream 2.0kb downstream 2000   false scaffold0042: 52269-54268 Medicago truncatula
Medtr0042s0120 5.0kb upstream 5.0kb upstream 6451   true scaffold0042: 54269-60719 Medicago truncatula
Medtr0042s0120 5.0kb upstream 5.0kb upstream 5000   false scaffold0042: 55720-60719 Medicago truncatula
Medtr0042s0120 5.0kb downstream 5.0kb downstream 6451   true scaffold0042: 49269-55719 Medicago truncatula
Medtr0042s0120 5.0kb downstream 5.0kb downstream 5000   false scaffold0042: 49269-54268 Medicago truncatula
Medtr0042s0120 10.0kb upstream 10.0kb upstream 11451   true scaffold0042: 54269-65719 Medicago truncatula
Medtr0042s0120 10.0kb upstream 10.0kb upstream 10000   false scaffold0042: 55720-65719 Medicago truncatula
Medtr0042s0120 10.0kb downstream 10.0kb downstream 11451   true scaffold0042: 44269-55719 Medicago truncatula
Medtr0042s0120 10.0kb downstream 10.0kb downstream 10000   false scaffold0042: 44269-54268 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
122314921 5265 Fabidae View MSA
124071412 5270 Rosid View MSA
123753670 5271 Pentapetalae View MSA
122775191 5272 Eudicot View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain