Gene : Medtr0049s0090 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF64 - X-BOX TRANSCRIPTION FACTOR-RELATED Description:  cellulose synthase-like protein
Genomic Order:  3 Name:  ? Medtr0049s0090
Secondary Identifier:  ? PAC:31092405
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1001 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0049s0090 0.5kb upstream 0.5kb upstream 2203   true scaffold0049: 63075-65277 Medicago truncatula
Medtr0049s0090 0.5kb upstream 0.5kb upstream 500   false scaffold0049: 63075-63574 Medicago truncatula
Medtr0049s0090 0.5kb downstream 0.5kb downstream 2203   true scaffold0049: 63575-65777 Medicago truncatula
Medtr0049s0090 0.5kb downstream 0.5kb downstream 500   false scaffold0049: 65278-65777 Medicago truncatula
Medtr0049s0090 1.0kb upstream 1.0kb upstream 2703   true scaffold0049: 62575-65277 Medicago truncatula
Medtr0049s0090 1.0kb upstream 1.0kb upstream 1000   false scaffold0049: 62575-63574 Medicago truncatula
Medtr0049s0090 1.0kb downstream 1.0kb downstream 2703   true scaffold0049: 63575-66277 Medicago truncatula
Medtr0049s0090 1.0kb downstream 1.0kb downstream 1000   false scaffold0049: 65278-66277 Medicago truncatula
Medtr0049s0090 2.0kb upstream 2.0kb upstream 3703   true scaffold0049: 61575-65277 Medicago truncatula
Medtr0049s0090 2.0kb upstream 2.0kb upstream 2000   false scaffold0049: 61575-63574 Medicago truncatula
Medtr0049s0090 2.0kb downstream 2.0kb downstream 3703   true scaffold0049: 63575-67277 Medicago truncatula
Medtr0049s0090 2.0kb downstream 2.0kb downstream 2000   false scaffold0049: 65278-67277 Medicago truncatula
Medtr0049s0090 5.0kb upstream 5.0kb upstream 6703   true scaffold0049: 58575-65277 Medicago truncatula
Medtr0049s0090 5.0kb upstream 5.0kb upstream 5000   false scaffold0049: 58575-63574 Medicago truncatula
Medtr0049s0090 5.0kb downstream 5.0kb downstream 6703   true scaffold0049: 63575-70277 Medicago truncatula
Medtr0049s0090 5.0kb downstream 5.0kb downstream 5000   false scaffold0049: 65278-70277 Medicago truncatula
Medtr0049s0090 10.0kb upstream 10.0kb upstream 11703   true scaffold0049: 53575-65277 Medicago truncatula
Medtr0049s0090 10.0kb upstream 10.0kb upstream 10000   false scaffold0049: 53575-63574 Medicago truncatula
Medtr0049s0090 10.0kb downstream 10.0kb downstream 11703   true scaffold0049: 63575-75277 Medicago truncatula
Medtr0049s0090 10.0kb downstream 10.0kb downstream 10000   false scaffold0049: 65278-75277 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122288133 5265 Fabidae View MSA
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain