Gene : Medtr0072s0050 M. truncatula Mt4.0v1
Defline:  (1 of 4) PF04410 - Gar1/Naf1 RNA binding region (Gar1) Description:  Gar1/Naf1 RNA-binding region protein
Genomic Order:  3 Name:  ? Medtr0072s0050
Secondary Identifier:  ? PAC:31084920
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0072s0050 0.5kb upstream 0.5kb upstream 4646   true scaffold0072: 29673-34318 Medicago truncatula
Medtr0072s0050 0.5kb upstream 0.5kb upstream 500   false scaffold0072: 33819-34318 Medicago truncatula
Medtr0072s0050 0.5kb downstream 0.5kb downstream 4646   true scaffold0072: 29173-33818 Medicago truncatula
Medtr0072s0050 0.5kb downstream 0.5kb downstream 500   false scaffold0072: 29173-29672 Medicago truncatula
Medtr0072s0050 1.0kb upstream 1.0kb upstream 5146   true scaffold0072: 29673-34818 Medicago truncatula
Medtr0072s0050 1.0kb upstream 1.0kb upstream 1000   false scaffold0072: 33819-34818 Medicago truncatula
Medtr0072s0050 1.0kb downstream 1.0kb downstream 5146   true scaffold0072: 28673-33818 Medicago truncatula
Medtr0072s0050 1.0kb downstream 1.0kb downstream 1000   false scaffold0072: 28673-29672 Medicago truncatula
Medtr0072s0050 2.0kb upstream 2.0kb upstream 6146   true scaffold0072: 29673-35818 Medicago truncatula
Medtr0072s0050 2.0kb upstream 2.0kb upstream 2000   false scaffold0072: 33819-35818 Medicago truncatula
Medtr0072s0050 2.0kb downstream 2.0kb downstream 6146   true scaffold0072: 27673-33818 Medicago truncatula
Medtr0072s0050 2.0kb downstream 2.0kb downstream 2000   false scaffold0072: 27673-29672 Medicago truncatula
Medtr0072s0050 5.0kb upstream 5.0kb upstream 9146   true scaffold0072: 29673-38818 Medicago truncatula
Medtr0072s0050 5.0kb upstream 5.0kb upstream 5000   false scaffold0072: 33819-38818 Medicago truncatula
Medtr0072s0050 5.0kb downstream 5.0kb downstream 9146   true scaffold0072: 24673-33818 Medicago truncatula
Medtr0072s0050 5.0kb downstream 5.0kb downstream 5000   false scaffold0072: 24673-29672 Medicago truncatula
Medtr0072s0050 10.0kb upstream 10.0kb upstream 14146   true scaffold0072: 29673-43818 Medicago truncatula
Medtr0072s0050 10.0kb upstream 10.0kb upstream 10000   false scaffold0072: 33819-43818 Medicago truncatula
Medtr0072s0050 10.0kb downstream 10.0kb downstream 14146   true scaffold0072: 19673-33818 Medicago truncatula
Medtr0072s0050 10.0kb downstream 10.0kb downstream 10000   false scaffold0072: 19673-29672 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041036 5273 Angiosperm View MSA
122311754 5265 Fabidae View MSA
124065409 5270 Rosid View MSA
123746164 5271 Pentapetalae View MSA
122790588 5272 Eudicot View MSA
121343792 5274 Embryophyte View MSA
123424387 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.339        
cufflinks 3.474        
cufflinks 6.115       High
cufflinks 1.531        
cufflinks 7.595       High
cufflinks 0.893       Low
cufflinks 1.716        
cufflinks 5.126        
cufflinks 2.338        

0 Strain