Gene : Medtr0062s0090 M. truncatula Mt4.0v1
Defline:  (1 of 17) PTHR11177//PTHR11177:SF190 - CHITINASE Description:  narbonin-like 2S protein
Genomic Order:  6 Name:  ? Medtr0062s0090
Secondary Identifier:  ? PAC:31100866
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6902 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0062s0090 0.5kb upstream 0.5kb upstream 1652   true scaffold0062: 35347-36998 Medicago truncatula
Medtr0062s0090 0.5kb upstream 0.5kb upstream 500   false scaffold0062: 35347-35846 Medicago truncatula
Medtr0062s0090 0.5kb downstream 0.5kb downstream 1652   true scaffold0062: 35847-37498 Medicago truncatula
Medtr0062s0090 0.5kb downstream 0.5kb downstream 500   false scaffold0062: 36999-37498 Medicago truncatula
Medtr0062s0090 1.0kb upstream 1.0kb upstream 2152   true scaffold0062: 34847-36998 Medicago truncatula
Medtr0062s0090 1.0kb upstream 1.0kb upstream 1000   false scaffold0062: 34847-35846 Medicago truncatula
Medtr0062s0090 1.0kb downstream 1.0kb downstream 2152   true scaffold0062: 35847-37998 Medicago truncatula
Medtr0062s0090 1.0kb downstream 1.0kb downstream 1000   false scaffold0062: 36999-37998 Medicago truncatula
Medtr0062s0090 2.0kb upstream 2.0kb upstream 3152   true scaffold0062: 33847-36998 Medicago truncatula
Medtr0062s0090 2.0kb upstream 2.0kb upstream 2000   false scaffold0062: 33847-35846 Medicago truncatula
Medtr0062s0090 2.0kb downstream 2.0kb downstream 3152   true scaffold0062: 35847-38998 Medicago truncatula
Medtr0062s0090 2.0kb downstream 2.0kb downstream 2000   false scaffold0062: 36999-38998 Medicago truncatula
Medtr0062s0090 5.0kb upstream 5.0kb upstream 6152   true scaffold0062: 30847-36998 Medicago truncatula
Medtr0062s0090 5.0kb upstream 5.0kb upstream 5000   false scaffold0062: 30847-35846 Medicago truncatula
Medtr0062s0090 5.0kb downstream 5.0kb downstream 6152   true scaffold0062: 35847-41998 Medicago truncatula
Medtr0062s0090 5.0kb downstream 5.0kb downstream 5000   false scaffold0062: 36999-41998 Medicago truncatula
Medtr0062s0090 10.0kb upstream 10.0kb upstream 11152   true scaffold0062: 25847-36998 Medicago truncatula
Medtr0062s0090 10.0kb upstream 10.0kb upstream 10000   false scaffold0062: 25847-35846 Medicago truncatula
Medtr0062s0090 10.0kb downstream 10.0kb downstream 11152   true scaffold0062: 35847-46998 Medicago truncatula
Medtr0062s0090 10.0kb downstream 10.0kb downstream 10000   false scaffold0062: 36999-46998 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316551 5265 Fabidae View MSA
124072600 5270 Rosid View MSA
123749602 5271 Pentapetalae View MSA
122797171 5272 Eudicot View MSA
122049953 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain