Gene : Medtr0059s0060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23105:SF5 - 39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL Description:  50S ribosomal protein L1p
Genomic Order:  1 Name:  ? Medtr0059s0060
Secondary Identifier:  ? PAC:31084583
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0059s0060 0.5kb upstream 0.5kb upstream 6139   true scaffold0059: 21829-27967 Medicago truncatula
Medtr0059s0060 0.5kb upstream 0.5kb upstream 500   false scaffold0059: 27468-27967 Medicago truncatula
Medtr0059s0060 0.5kb downstream 0.5kb downstream 6139   true scaffold0059: 21329-27467 Medicago truncatula
Medtr0059s0060 0.5kb downstream 0.5kb downstream 500   false scaffold0059: 21329-21828 Medicago truncatula
Medtr0059s0060 1.0kb upstream 1.0kb upstream 6639   true scaffold0059: 21829-28467 Medicago truncatula
Medtr0059s0060 1.0kb upstream 1.0kb upstream 1000   false scaffold0059: 27468-28467 Medicago truncatula
Medtr0059s0060 1.0kb downstream 1.0kb downstream 6639   true scaffold0059: 20829-27467 Medicago truncatula
Medtr0059s0060 1.0kb downstream 1.0kb downstream 1000   false scaffold0059: 20829-21828 Medicago truncatula
Medtr0059s0060 2.0kb upstream 2.0kb upstream 7639   true scaffold0059: 21829-29467 Medicago truncatula
Medtr0059s0060 2.0kb upstream 2.0kb upstream 2000   false scaffold0059: 27468-29467 Medicago truncatula
Medtr0059s0060 2.0kb downstream 2.0kb downstream 7639   true scaffold0059: 19829-27467 Medicago truncatula
Medtr0059s0060 2.0kb downstream 2.0kb downstream 2000   false scaffold0059: 19829-21828 Medicago truncatula
Medtr0059s0060 5.0kb upstream 5.0kb upstream 10639   true scaffold0059: 21829-32467 Medicago truncatula
Medtr0059s0060 5.0kb upstream 5.0kb upstream 5000   false scaffold0059: 27468-32467 Medicago truncatula
Medtr0059s0060 5.0kb downstream 5.0kb downstream 10639   true scaffold0059: 16829-27467 Medicago truncatula
Medtr0059s0060 5.0kb downstream 5.0kb downstream 5000   false scaffold0059: 16829-21828 Medicago truncatula
Medtr0059s0060 10.0kb upstream 10.0kb upstream 15639   true scaffold0059: 21829-37467 Medicago truncatula
Medtr0059s0060 10.0kb upstream 10.0kb upstream 10000   false scaffold0059: 27468-37467 Medicago truncatula
Medtr0059s0060 10.0kb downstream 10.0kb downstream 15639   true scaffold0059: 11829-27467 Medicago truncatula
Medtr0059s0060 10.0kb downstream 10.0kb downstream 10000   false scaffold0059: 11829-21828 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299154 5265 Fabidae View MSA
124061690 5270 Rosid View MSA
123738207 5271 Pentapetalae View MSA
122788620 5272 Eudicot View MSA
122046833 5273 Angiosperm View MSA
121346612 5274 Embryophyte View MSA
123427528 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.22     High  
cufflinks 101.676     High High
cufflinks 117.861     High High
cufflinks 2.968       Low
cufflinks 87.272     High  
cufflinks 4.098        
cufflinks 4.914        
cufflinks 111.993     High High
cufflinks 4.823        

0 Strain