Gene : Medtr0062s0020 M. truncatula Mt4.0v1
Defline:  (1 of 17) PTHR11177//PTHR11177:SF190 - CHITINASE Description:  glycoside hydrolase family 18 protein
Genomic Order:  1 Name:  ? Medtr0062s0020
Secondary Identifier:  ? PAC:31100868
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6902 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0062s0020 0.5kb upstream 0.5kb upstream 1715   true scaffold0062: 4538-6252 Medicago truncatula
Medtr0062s0020 0.5kb upstream 0.5kb upstream 500   false scaffold0062: 4538-5037 Medicago truncatula
Medtr0062s0020 0.5kb downstream 0.5kb downstream 1715   true scaffold0062: 5038-6752 Medicago truncatula
Medtr0062s0020 0.5kb downstream 0.5kb downstream 500   false scaffold0062: 6253-6752 Medicago truncatula
Medtr0062s0020 1.0kb upstream 1.0kb upstream 2215   true scaffold0062: 4038-6252 Medicago truncatula
Medtr0062s0020 1.0kb upstream 1.0kb upstream 1000   false scaffold0062: 4038-5037 Medicago truncatula
Medtr0062s0020 1.0kb downstream 1.0kb downstream 2215   true scaffold0062: 5038-7252 Medicago truncatula
Medtr0062s0020 1.0kb downstream 1.0kb downstream 1000   false scaffold0062: 6253-7252 Medicago truncatula
Medtr0062s0020 2.0kb upstream 2.0kb upstream 3215   true scaffold0062: 3038-6252 Medicago truncatula
Medtr0062s0020 2.0kb upstream 2.0kb upstream 2000   false scaffold0062: 3038-5037 Medicago truncatula
Medtr0062s0020 2.0kb downstream 2.0kb downstream 3215   true scaffold0062: 5038-8252 Medicago truncatula
Medtr0062s0020 2.0kb downstream 2.0kb downstream 2000   false scaffold0062: 6253-8252 Medicago truncatula
Medtr0062s0020 5.0kb upstream 5.0kb upstream 6215   true scaffold0062: 38-6252 Medicago truncatula
Medtr0062s0020 5.0kb upstream 5.0kb upstream 5000   false scaffold0062: 38-5037 Medicago truncatula
Medtr0062s0020 5.0kb downstream 5.0kb downstream 6215   true scaffold0062: 5038-11252 Medicago truncatula
Medtr0062s0020 5.0kb downstream 5.0kb downstream 5000   false scaffold0062: 6253-11252 Medicago truncatula
Medtr0062s0020 10.0kb upstream 10.0kb upstream 6252   true scaffold0062: 1-6252 Medicago truncatula
Medtr0062s0020 10.0kb upstream 10.0kb upstream 5037   false scaffold0062: 1-5037 Medicago truncatula
Medtr0062s0020 10.0kb downstream 10.0kb downstream 11215   true scaffold0062: 5038-16252 Medicago truncatula
Medtr0062s0020 10.0kb downstream 10.0kb downstream 10000   false scaffold0062: 6253-16252 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316551 5265 Fabidae View MSA
124072600 5270 Rosid View MSA
123749602 5271 Pentapetalae View MSA
122797171 5272 Eudicot View MSA
122049953 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.03     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 18.386     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.674        
cufflinks 12.117     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 60.904     High  

0 Strain