Gene : Medtr0102s0060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31901:SF10 - AUXIN-RESPONSIVE GH3 FAMILY PROTEIN Description:  indole-3-acetic acid-amido synthetase
Genomic Order:  3 Name:  ? Medtr0102s0060
Secondary Identifier:  ? PAC:31100990
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0102s0060 0.5kb upstream 0.5kb upstream 10946   true scaffold0102: 21272-32217 Medicago truncatula
Medtr0102s0060 0.5kb upstream 0.5kb upstream 500   false scaffold0102: 21272-21771 Medicago truncatula
Medtr0102s0060 0.5kb downstream 0.5kb downstream 10946   true scaffold0102: 21772-32717 Medicago truncatula
Medtr0102s0060 0.5kb downstream 0.5kb downstream 500   false scaffold0102: 32218-32717 Medicago truncatula
Medtr0102s0060 1.0kb upstream 1.0kb upstream 11446   true scaffold0102: 20772-32217 Medicago truncatula
Medtr0102s0060 1.0kb upstream 1.0kb upstream 1000   false scaffold0102: 20772-21771 Medicago truncatula
Medtr0102s0060 1.0kb downstream 1.0kb downstream 11446   true scaffold0102: 21772-33217 Medicago truncatula
Medtr0102s0060 1.0kb downstream 1.0kb downstream 1000   false scaffold0102: 32218-33217 Medicago truncatula
Medtr0102s0060 2.0kb upstream 2.0kb upstream 12446   true scaffold0102: 19772-32217 Medicago truncatula
Medtr0102s0060 2.0kb upstream 2.0kb upstream 2000   false scaffold0102: 19772-21771 Medicago truncatula
Medtr0102s0060 2.0kb downstream 2.0kb downstream 12446   true scaffold0102: 21772-34217 Medicago truncatula
Medtr0102s0060 2.0kb downstream 2.0kb downstream 2000   false scaffold0102: 32218-34217 Medicago truncatula
Medtr0102s0060 5.0kb upstream 5.0kb upstream 15446   true scaffold0102: 16772-32217 Medicago truncatula
Medtr0102s0060 5.0kb upstream 5.0kb upstream 5000   false scaffold0102: 16772-21771 Medicago truncatula
Medtr0102s0060 5.0kb downstream 5.0kb downstream 15446   true scaffold0102: 21772-37217 Medicago truncatula
Medtr0102s0060 5.0kb downstream 5.0kb downstream 5000   false scaffold0102: 32218-37217 Medicago truncatula
Medtr0102s0060 10.0kb upstream 10.0kb upstream 20446   true scaffold0102: 11772-32217 Medicago truncatula
Medtr0102s0060 10.0kb upstream 10.0kb upstream 10000   false scaffold0102: 11772-21771 Medicago truncatula
Medtr0102s0060 10.0kb downstream 10.0kb downstream 20446   true scaffold0102: 21772-42217 Medicago truncatula
Medtr0102s0060 10.0kb downstream 10.0kb downstream 10000   false scaffold0102: 32218-42217 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301063 5265 Fabidae View MSA
124061485 5270 Rosid View MSA
123750974 5271 Pentapetalae View MSA
122788178 5272 Eudicot View MSA
122044155 5273 Angiosperm View MSA
121349637 5274 Embryophyte View MSA
123381383 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.255        
cufflinks 0.772        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.855        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 1.361        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain