Gene : Medtr0002s0790 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11760:SF19 - 30S RIBOSOMAL PROTEIN S3, CHLOROPLASTIC Description:  30S ribosomal protein S3
Genomic Order:  49 Name:  ? Medtr0002s0790
Secondary Identifier:  ? PAC:31084762
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0002s0790 0.5kb upstream 0.5kb upstream 1220   true scaffold0002: 279513-280732 Medicago truncatula
Medtr0002s0790 0.5kb upstream 0.5kb upstream 500   false scaffold0002: 280233-280732 Medicago truncatula
Medtr0002s0790 0.5kb downstream 0.5kb downstream 1220   true scaffold0002: 279013-280232 Medicago truncatula
Medtr0002s0790 0.5kb downstream 0.5kb downstream 500   false scaffold0002: 279013-279512 Medicago truncatula
Medtr0002s0790 1.0kb upstream 1.0kb upstream 1720   true scaffold0002: 279513-281232 Medicago truncatula
Medtr0002s0790 1.0kb upstream 1.0kb upstream 1000   false scaffold0002: 280233-281232 Medicago truncatula
Medtr0002s0790 1.0kb downstream 1.0kb downstream 1720   true scaffold0002: 278513-280232 Medicago truncatula
Medtr0002s0790 1.0kb downstream 1.0kb downstream 1000   false scaffold0002: 278513-279512 Medicago truncatula
Medtr0002s0790 2.0kb upstream 2.0kb upstream 2720   true scaffold0002: 279513-282232 Medicago truncatula
Medtr0002s0790 2.0kb upstream 2.0kb upstream 2000   false scaffold0002: 280233-282232 Medicago truncatula
Medtr0002s0790 2.0kb downstream 2.0kb downstream 2720   true scaffold0002: 277513-280232 Medicago truncatula
Medtr0002s0790 2.0kb downstream 2.0kb downstream 2000   false scaffold0002: 277513-279512 Medicago truncatula
Medtr0002s0790 5.0kb upstream 5.0kb upstream 5720   true scaffold0002: 279513-285232 Medicago truncatula
Medtr0002s0790 5.0kb upstream 5.0kb upstream 5000   false scaffold0002: 280233-285232 Medicago truncatula
Medtr0002s0790 5.0kb downstream 5.0kb downstream 5720   true scaffold0002: 274513-280232 Medicago truncatula
Medtr0002s0790 5.0kb downstream 5.0kb downstream 5000   false scaffold0002: 274513-279512 Medicago truncatula
Medtr0002s0790 10.0kb upstream 10.0kb upstream 10720   true scaffold0002: 279513-290232 Medicago truncatula
Medtr0002s0790 10.0kb upstream 10.0kb upstream 10000   false scaffold0002: 280233-290232 Medicago truncatula
Medtr0002s0790 10.0kb downstream 10.0kb downstream 10720   true scaffold0002: 269513-280232 Medicago truncatula
Medtr0002s0790 10.0kb downstream 10.0kb downstream 10000   false scaffold0002: 269513-279512 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121783753 5273 Angiosperm View MSA
122270081 5265 Fabidae Singleton cluster - no MSA
124010807 5270 Rosid Singleton cluster - no MSA
123755463 5271 Pentapetalae View MSA
122776720 5272 Eudicot View MSA
121055200 5274 Embryophyte View MSA
123095145 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain