Gene : Medtr0002s0550 M. truncatula Mt4.0v1
Defline:  (1 of 2) KOG1353 - F0F1-type ATP synthase, alpha subunit Description:  ATP synthase F1, alpha subunit
Genomic Order:  33 Name:  ? Medtr0002s0550
Secondary Identifier:  ? PAC:31084774
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6126 Medicago truncatula pathologic  
Mtruncatula PWY-7219 Medicago truncatula pathologic  
Mtruncatula PWY-7229 Medicago truncatula pathologic  
Mtruncatula PWY-841 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0002s0550 0.5kb upstream 0.5kb upstream 2015   true scaffold0002: 234004-236018 Medicago truncatula
Medtr0002s0550 0.5kb upstream 0.5kb upstream 500   false scaffold0002: 234004-234503 Medicago truncatula
Medtr0002s0550 0.5kb downstream 0.5kb downstream 2015   true scaffold0002: 234504-236518 Medicago truncatula
Medtr0002s0550 0.5kb downstream 0.5kb downstream 500   false scaffold0002: 236019-236518 Medicago truncatula
Medtr0002s0550 1.0kb upstream 1.0kb upstream 2515   true scaffold0002: 233504-236018 Medicago truncatula
Medtr0002s0550 1.0kb upstream 1.0kb upstream 1000   false scaffold0002: 233504-234503 Medicago truncatula
Medtr0002s0550 1.0kb downstream 1.0kb downstream 2515   true scaffold0002: 234504-237018 Medicago truncatula
Medtr0002s0550 1.0kb downstream 1.0kb downstream 1000   false scaffold0002: 236019-237018 Medicago truncatula
Medtr0002s0550 2.0kb upstream 2.0kb upstream 3515   true scaffold0002: 232504-236018 Medicago truncatula
Medtr0002s0550 2.0kb upstream 2.0kb upstream 2000   false scaffold0002: 232504-234503 Medicago truncatula
Medtr0002s0550 2.0kb downstream 2.0kb downstream 3515   true scaffold0002: 234504-238018 Medicago truncatula
Medtr0002s0550 2.0kb downstream 2.0kb downstream 2000   false scaffold0002: 236019-238018 Medicago truncatula
Medtr0002s0550 5.0kb upstream 5.0kb upstream 6515   true scaffold0002: 229504-236018 Medicago truncatula
Medtr0002s0550 5.0kb upstream 5.0kb upstream 5000   false scaffold0002: 229504-234503 Medicago truncatula
Medtr0002s0550 5.0kb downstream 5.0kb downstream 6515   true scaffold0002: 234504-241018 Medicago truncatula
Medtr0002s0550 5.0kb downstream 5.0kb downstream 5000   false scaffold0002: 236019-241018 Medicago truncatula
Medtr0002s0550 10.0kb upstream 10.0kb upstream 11515   true scaffold0002: 224504-236018 Medicago truncatula
Medtr0002s0550 10.0kb upstream 10.0kb upstream 10000   false scaffold0002: 224504-234503 Medicago truncatula
Medtr0002s0550 10.0kb downstream 10.0kb downstream 11515   true scaffold0002: 234504-246018 Medicago truncatula
Medtr0002s0550 10.0kb downstream 10.0kb downstream 10000   false scaffold0002: 236019-246018 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297906 5265 Fabidae View MSA
124064158 5270 Rosid View MSA
123753752 5271 Pentapetalae View MSA
122797462 5272 Eudicot View MSA
122051574 5273 Angiosperm View MSA
123429126 5275 Viridiplantae View MSA
121351571 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain