Gene : Medtr0002s0380 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II Q(B) protein
Genomic Order:  26 Name:  ? Medtr0002s0380
Secondary Identifier:  ? PAC:31084709
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0002s0380 0.5kb upstream 0.5kb upstream 1562   true scaffold0002: 200333-201894 Medicago truncatula
Medtr0002s0380 0.5kb upstream 0.5kb upstream 500   false scaffold0002: 201395-201894 Medicago truncatula
Medtr0002s0380 0.5kb downstream 0.5kb downstream 1562   true scaffold0002: 199833-201394 Medicago truncatula
Medtr0002s0380 0.5kb downstream 0.5kb downstream 500   false scaffold0002: 199833-200332 Medicago truncatula
Medtr0002s0380 1.0kb upstream 1.0kb upstream 2062   true scaffold0002: 200333-202394 Medicago truncatula
Medtr0002s0380 1.0kb upstream 1.0kb upstream 1000   false scaffold0002: 201395-202394 Medicago truncatula
Medtr0002s0380 1.0kb downstream 1.0kb downstream 2062   true scaffold0002: 199333-201394 Medicago truncatula
Medtr0002s0380 1.0kb downstream 1.0kb downstream 1000   false scaffold0002: 199333-200332 Medicago truncatula
Medtr0002s0380 2.0kb upstream 2.0kb upstream 3062   true scaffold0002: 200333-203394 Medicago truncatula
Medtr0002s0380 2.0kb upstream 2.0kb upstream 2000   false scaffold0002: 201395-203394 Medicago truncatula
Medtr0002s0380 2.0kb downstream 2.0kb downstream 3062   true scaffold0002: 198333-201394 Medicago truncatula
Medtr0002s0380 2.0kb downstream 2.0kb downstream 2000   false scaffold0002: 198333-200332 Medicago truncatula
Medtr0002s0380 5.0kb upstream 5.0kb upstream 6062   true scaffold0002: 200333-206394 Medicago truncatula
Medtr0002s0380 5.0kb upstream 5.0kb upstream 5000   false scaffold0002: 201395-206394 Medicago truncatula
Medtr0002s0380 5.0kb downstream 5.0kb downstream 6062   true scaffold0002: 195333-201394 Medicago truncatula
Medtr0002s0380 5.0kb downstream 5.0kb downstream 5000   false scaffold0002: 195333-200332 Medicago truncatula
Medtr0002s0380 10.0kb upstream 10.0kb upstream 11062   true scaffold0002: 200333-211394 Medicago truncatula
Medtr0002s0380 10.0kb upstream 10.0kb upstream 10000   false scaffold0002: 201395-211394 Medicago truncatula
Medtr0002s0380 10.0kb downstream 10.0kb downstream 11062   true scaffold0002: 190333-201394 Medicago truncatula
Medtr0002s0380 10.0kb downstream 10.0kb downstream 10000   false scaffold0002: 190333-200332 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297212 5265 Fabidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.104     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain