Gene : Medtr0003s0690 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12780 - RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED Description:  DNA-directed RNA polymerase III subunit RPC6-like protein
Genomic Order:  35 Name:  ? Medtr0003s0690
Secondary Identifier:  ? PAC:31105806
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0003s0690 0.5kb upstream 0.5kb upstream 3393   true scaffold0003: 416744-420136 Medicago truncatula
Medtr0003s0690 0.5kb upstream 0.5kb upstream 500   false scaffold0003: 416744-417243 Medicago truncatula
Medtr0003s0690 0.5kb downstream 0.5kb downstream 3393   true scaffold0003: 417244-420636 Medicago truncatula
Medtr0003s0690 0.5kb downstream 0.5kb downstream 500   false scaffold0003: 420137-420636 Medicago truncatula
Medtr0003s0690 1.0kb upstream 1.0kb upstream 3893   true scaffold0003: 416244-420136 Medicago truncatula
Medtr0003s0690 1.0kb upstream 1.0kb upstream 1000   false scaffold0003: 416244-417243 Medicago truncatula
Medtr0003s0690 1.0kb downstream 1.0kb downstream 3893   true scaffold0003: 417244-421136 Medicago truncatula
Medtr0003s0690 1.0kb downstream 1.0kb downstream 1000   false scaffold0003: 420137-421136 Medicago truncatula
Medtr0003s0690 2.0kb upstream 2.0kb upstream 4893   true scaffold0003: 415244-420136 Medicago truncatula
Medtr0003s0690 2.0kb upstream 2.0kb upstream 2000   false scaffold0003: 415244-417243 Medicago truncatula
Medtr0003s0690 2.0kb downstream 2.0kb downstream 4893   true scaffold0003: 417244-422136 Medicago truncatula
Medtr0003s0690 2.0kb downstream 2.0kb downstream 2000   false scaffold0003: 420137-422136 Medicago truncatula
Medtr0003s0690 5.0kb upstream 5.0kb upstream 7893   true scaffold0003: 412244-420136 Medicago truncatula
Medtr0003s0690 5.0kb upstream 5.0kb upstream 5000   false scaffold0003: 412244-417243 Medicago truncatula
Medtr0003s0690 5.0kb downstream 5.0kb downstream 7893   true scaffold0003: 417244-425136 Medicago truncatula
Medtr0003s0690 5.0kb downstream 5.0kb downstream 5000   false scaffold0003: 420137-425136 Medicago truncatula
Medtr0003s0690 10.0kb upstream 10.0kb upstream 12893   true scaffold0003: 407244-420136 Medicago truncatula
Medtr0003s0690 10.0kb upstream 10.0kb upstream 10000   false scaffold0003: 407244-417243 Medicago truncatula
Medtr0003s0690 10.0kb downstream 10.0kb downstream 12893   true scaffold0003: 417244-430136 Medicago truncatula
Medtr0003s0690 10.0kb downstream 10.0kb downstream 10000   false scaffold0003: 420137-430136 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122270096 5265 Fabidae Singleton cluster - no MSA
124010820 5270 Rosid Singleton cluster - no MSA
123744384 5271 Pentapetalae View MSA
122788690 5272 Eudicot View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.028        
cufflinks 0.796        
cufflinks 0.949        
cufflinks 1.164        
cufflinks 0.717       Low
cufflinks 1.255       High
cufflinks 1.329       High
cufflinks 0.712       Low
cufflinks 1.046        

0 Strain