Gene : Medtr0008s0120 M. truncatula Mt4.0v1
Defline:  (1 of 45) PF01357 - Pollen allergen (Pollen_allerg_1) Description:  expansin-A25 protein
Genomic Order:  4 Name:  ? Medtr0008s0120
Secondary Identifier:  ? PAC:31100965
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0008s0120 0.5kb upstream 0.5kb upstream 1921   true scaffold0008: 44366-46286 Medicago truncatula
Medtr0008s0120 0.5kb upstream 0.5kb upstream 500   false scaffold0008: 45787-46286 Medicago truncatula
Medtr0008s0120 0.5kb downstream 0.5kb downstream 1921   true scaffold0008: 43866-45786 Medicago truncatula
Medtr0008s0120 0.5kb downstream 0.5kb downstream 500   false scaffold0008: 43866-44365 Medicago truncatula
Medtr0008s0120 1.0kb upstream 1.0kb upstream 2421   true scaffold0008: 44366-46786 Medicago truncatula
Medtr0008s0120 1.0kb upstream 1.0kb upstream 1000   false scaffold0008: 45787-46786 Medicago truncatula
Medtr0008s0120 1.0kb downstream 1.0kb downstream 2421   true scaffold0008: 43366-45786 Medicago truncatula
Medtr0008s0120 1.0kb downstream 1.0kb downstream 1000   false scaffold0008: 43366-44365 Medicago truncatula
Medtr0008s0120 2.0kb upstream 2.0kb upstream 3421   true scaffold0008: 44366-47786 Medicago truncatula
Medtr0008s0120 2.0kb upstream 2.0kb upstream 2000   false scaffold0008: 45787-47786 Medicago truncatula
Medtr0008s0120 2.0kb downstream 2.0kb downstream 3421   true scaffold0008: 42366-45786 Medicago truncatula
Medtr0008s0120 2.0kb downstream 2.0kb downstream 2000   false scaffold0008: 42366-44365 Medicago truncatula
Medtr0008s0120 5.0kb upstream 5.0kb upstream 6421   true scaffold0008: 44366-50786 Medicago truncatula
Medtr0008s0120 5.0kb upstream 5.0kb upstream 5000   false scaffold0008: 45787-50786 Medicago truncatula
Medtr0008s0120 5.0kb downstream 5.0kb downstream 6421   true scaffold0008: 39366-45786 Medicago truncatula
Medtr0008s0120 5.0kb downstream 5.0kb downstream 5000   false scaffold0008: 39366-44365 Medicago truncatula
Medtr0008s0120 10.0kb upstream 10.0kb upstream 11421   true scaffold0008: 44366-55786 Medicago truncatula
Medtr0008s0120 10.0kb upstream 10.0kb upstream 10000   false scaffold0008: 45787-55786 Medicago truncatula
Medtr0008s0120 10.0kb downstream 10.0kb downstream 11421   true scaffold0008: 34366-45786 Medicago truncatula
Medtr0008s0120 10.0kb downstream 10.0kb downstream 10000   false scaffold0008: 34366-44365 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313238 5265 Fabidae View MSA
124075268 5270 Rosid View MSA
123747449 5271 Pentapetalae View MSA
122792486 5272 Eudicot View MSA
122042176 5273 Angiosperm View MSA
123429074 5275 Viridiplantae View MSA
121348621 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain