Gene : Medtr0007s0380 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13935:SF54 - TRANSCRIPTION FACTOR BHLH118-RELATED Description:  transcription factor
Genomic Order:  18 Name:  ? Medtr0007s0380
Secondary Identifier:  ? PAC:31061848
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0007s0380 0.5kb upstream 0.5kb upstream 4548   true scaffold0007: 218356-222903 Medicago truncatula
Medtr0007s0380 0.5kb upstream 0.5kb upstream 500   false scaffold0007: 218356-218855 Medicago truncatula
Medtr0007s0380 0.5kb downstream 0.5kb downstream 4548   true scaffold0007: 218856-223403 Medicago truncatula
Medtr0007s0380 0.5kb downstream 0.5kb downstream 500   false scaffold0007: 222904-223403 Medicago truncatula
Medtr0007s0380 1.0kb upstream 1.0kb upstream 5048   true scaffold0007: 217856-222903 Medicago truncatula
Medtr0007s0380 1.0kb upstream 1.0kb upstream 1000   false scaffold0007: 217856-218855 Medicago truncatula
Medtr0007s0380 1.0kb downstream 1.0kb downstream 5048   true scaffold0007: 218856-223903 Medicago truncatula
Medtr0007s0380 1.0kb downstream 1.0kb downstream 1000   false scaffold0007: 222904-223903 Medicago truncatula
Medtr0007s0380 2.0kb upstream 2.0kb upstream 6048   true scaffold0007: 216856-222903 Medicago truncatula
Medtr0007s0380 2.0kb upstream 2.0kb upstream 2000   false scaffold0007: 216856-218855 Medicago truncatula
Medtr0007s0380 2.0kb downstream 2.0kb downstream 6048   true scaffold0007: 218856-224903 Medicago truncatula
Medtr0007s0380 2.0kb downstream 2.0kb downstream 2000   false scaffold0007: 222904-224903 Medicago truncatula
Medtr0007s0380 5.0kb upstream 5.0kb upstream 9048   true scaffold0007: 213856-222903 Medicago truncatula
Medtr0007s0380 5.0kb upstream 5.0kb upstream 5000   false scaffold0007: 213856-218855 Medicago truncatula
Medtr0007s0380 5.0kb downstream 5.0kb downstream 9048   true scaffold0007: 218856-227903 Medicago truncatula
Medtr0007s0380 5.0kb downstream 5.0kb downstream 5000   false scaffold0007: 222904-227903 Medicago truncatula
Medtr0007s0380 10.0kb upstream 10.0kb upstream 14048   true scaffold0007: 208856-222903 Medicago truncatula
Medtr0007s0380 10.0kb upstream 10.0kb upstream 10000   false scaffold0007: 208856-218855 Medicago truncatula
Medtr0007s0380 10.0kb downstream 10.0kb downstream 14048   true scaffold0007: 218856-232903 Medicago truncatula
Medtr0007s0380 10.0kb downstream 10.0kb downstream 10000   false scaffold0007: 222904-232903 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314557 5265 Fabidae View MSA
124073139 5270 Rosid View MSA
123750941 5271 Pentapetalae View MSA
122792125 5272 Eudicot View MSA
122050150 5273 Angiosperm View MSA
121311764 5274 Embryophyte View MSA
123349017 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.046     Low Low
cufflinks 0.759        
cufflinks 1.262        
cufflinks 0.784        
cufflinks 0.587        
cufflinks 1.327        
cufflinks 1.085        
cufflinks 0.739        
cufflinks 1.707        

0 Strain