Gene : Medtr0007s0330 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13935:SF54 - TRANSCRIPTION FACTOR BHLH118-RELATED Description:  transcription factor
Genomic Order:  17 Name:  ? Medtr0007s0330
Secondary Identifier:  ? PAC:31061842
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0007s0330 0.5kb upstream 0.5kb upstream 3889   true scaffold0007: 192795-196683 Medicago truncatula
Medtr0007s0330 0.5kb upstream 0.5kb upstream 500   false scaffold0007: 196184-196683 Medicago truncatula
Medtr0007s0330 0.5kb downstream 0.5kb downstream 3889   true scaffold0007: 192295-196183 Medicago truncatula
Medtr0007s0330 0.5kb downstream 0.5kb downstream 500   false scaffold0007: 192295-192794 Medicago truncatula
Medtr0007s0330 1.0kb upstream 1.0kb upstream 4389   true scaffold0007: 192795-197183 Medicago truncatula
Medtr0007s0330 1.0kb upstream 1.0kb upstream 1000   false scaffold0007: 196184-197183 Medicago truncatula
Medtr0007s0330 1.0kb downstream 1.0kb downstream 4389   true scaffold0007: 191795-196183 Medicago truncatula
Medtr0007s0330 1.0kb downstream 1.0kb downstream 1000   false scaffold0007: 191795-192794 Medicago truncatula
Medtr0007s0330 2.0kb upstream 2.0kb upstream 5389   true scaffold0007: 192795-198183 Medicago truncatula
Medtr0007s0330 2.0kb upstream 2.0kb upstream 2000   false scaffold0007: 196184-198183 Medicago truncatula
Medtr0007s0330 2.0kb downstream 2.0kb downstream 5389   true scaffold0007: 190795-196183 Medicago truncatula
Medtr0007s0330 2.0kb downstream 2.0kb downstream 2000   false scaffold0007: 190795-192794 Medicago truncatula
Medtr0007s0330 5.0kb upstream 5.0kb upstream 8389   true scaffold0007: 192795-201183 Medicago truncatula
Medtr0007s0330 5.0kb upstream 5.0kb upstream 5000   false scaffold0007: 196184-201183 Medicago truncatula
Medtr0007s0330 5.0kb downstream 5.0kb downstream 8389   true scaffold0007: 187795-196183 Medicago truncatula
Medtr0007s0330 5.0kb downstream 5.0kb downstream 5000   false scaffold0007: 187795-192794 Medicago truncatula
Medtr0007s0330 10.0kb upstream 10.0kb upstream 13389   true scaffold0007: 192795-206183 Medicago truncatula
Medtr0007s0330 10.0kb upstream 10.0kb upstream 10000   false scaffold0007: 196184-206183 Medicago truncatula
Medtr0007s0330 10.0kb downstream 10.0kb downstream 13389   true scaffold0007: 182795-196183 Medicago truncatula
Medtr0007s0330 10.0kb downstream 10.0kb downstream 10000   false scaffold0007: 182795-192794 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314557 5265 Fabidae View MSA
124073139 5270 Rosid View MSA
123750941 5271 Pentapetalae View MSA
122792125 5272 Eudicot View MSA
122050150 5273 Angiosperm View MSA
121311764 5274 Embryophyte View MSA
123349017 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.042     Low Low
cufflinks 0.292        
cufflinks 0.336        
cufflinks 1.657        
cufflinks 0.276        
cufflinks 1.949        
cufflinks 2.002        
cufflinks 0.456        
cufflinks 2.973       High

0 Strain