Gene : Medtr0013s0230 M. truncatula Mt4.0v1
Defline:  (1 of 12) 5.4.99.39 - Beta-amyrin synthase / 2,3-oxidosqualene beta-amyrin cyclase Description:  beta-amyrin synthase
Genomic Order:  9 Name:  ? Medtr0013s0230
Secondary Identifier:  ? PAC:31100850
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5203 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0013s0230 0.5kb upstream 0.5kb upstream 14719   true scaffold0013: 88191-102909 Medicago truncatula
Medtr0013s0230 0.5kb upstream 0.5kb upstream 500   false scaffold0013: 102410-102909 Medicago truncatula
Medtr0013s0230 0.5kb downstream 0.5kb downstream 14719   true scaffold0013: 87691-102409 Medicago truncatula
Medtr0013s0230 0.5kb downstream 0.5kb downstream 500   false scaffold0013: 87691-88190 Medicago truncatula
Medtr0013s0230 1.0kb upstream 1.0kb upstream 15219   true scaffold0013: 88191-103409 Medicago truncatula
Medtr0013s0230 1.0kb upstream 1.0kb upstream 1000   false scaffold0013: 102410-103409 Medicago truncatula
Medtr0013s0230 1.0kb downstream 1.0kb downstream 15219   true scaffold0013: 87191-102409 Medicago truncatula
Medtr0013s0230 1.0kb downstream 1.0kb downstream 1000   false scaffold0013: 87191-88190 Medicago truncatula
Medtr0013s0230 2.0kb upstream 2.0kb upstream 16219   true scaffold0013: 88191-104409 Medicago truncatula
Medtr0013s0230 2.0kb upstream 2.0kb upstream 2000   false scaffold0013: 102410-104409 Medicago truncatula
Medtr0013s0230 2.0kb downstream 2.0kb downstream 16219   true scaffold0013: 86191-102409 Medicago truncatula
Medtr0013s0230 2.0kb downstream 2.0kb downstream 2000   false scaffold0013: 86191-88190 Medicago truncatula
Medtr0013s0230 5.0kb upstream 5.0kb upstream 19219   true scaffold0013: 88191-107409 Medicago truncatula
Medtr0013s0230 5.0kb upstream 5.0kb upstream 5000   false scaffold0013: 102410-107409 Medicago truncatula
Medtr0013s0230 5.0kb downstream 5.0kb downstream 19219   true scaffold0013: 83191-102409 Medicago truncatula
Medtr0013s0230 5.0kb downstream 5.0kb downstream 5000   false scaffold0013: 83191-88190 Medicago truncatula
Medtr0013s0230 10.0kb upstream 10.0kb upstream 24219   true scaffold0013: 88191-112409 Medicago truncatula
Medtr0013s0230 10.0kb upstream 10.0kb upstream 10000   false scaffold0013: 102410-112409 Medicago truncatula
Medtr0013s0230 10.0kb downstream 10.0kb downstream 24219   true scaffold0013: 78191-102409 Medicago truncatula
Medtr0013s0230 10.0kb downstream 10.0kb downstream 10000   false scaffold0013: 78191-88190 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028235 5273 Angiosperm View MSA
122315387 5265 Fabidae View MSA
124075304 5270 Rosid View MSA
123750414 5271 Pentapetalae View MSA
122773643 5272 Eudicot View MSA
121297756 5274 Embryophyte View MSA
123335781 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low  
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low  
cufflinks 0.002     Low  
cufflinks 0.004     Low  
cufflinks 0.185       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.361       High

0 Strain