Gene : Medtr0019s0160 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10773 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 Description:  DNA-directed RNA polymerase I, II
Genomic Order:  13 Name:  ? Medtr0019s0160
Secondary Identifier:  ? PAC:31092159
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0019s0160 0.5kb upstream 0.5kb upstream 3579   true scaffold0019: 103055-106633 Medicago truncatula
Medtr0019s0160 0.5kb upstream 0.5kb upstream 500   false scaffold0019: 103055-103554 Medicago truncatula
Medtr0019s0160 0.5kb downstream 0.5kb downstream 3579   true scaffold0019: 103555-107133 Medicago truncatula
Medtr0019s0160 0.5kb downstream 0.5kb downstream 500   false scaffold0019: 106634-107133 Medicago truncatula
Medtr0019s0160 1.0kb upstream 1.0kb upstream 4079   true scaffold0019: 102555-106633 Medicago truncatula
Medtr0019s0160 1.0kb upstream 1.0kb upstream 1000   false scaffold0019: 102555-103554 Medicago truncatula
Medtr0019s0160 1.0kb downstream 1.0kb downstream 4079   true scaffold0019: 103555-107633 Medicago truncatula
Medtr0019s0160 1.0kb downstream 1.0kb downstream 1000   false scaffold0019: 106634-107633 Medicago truncatula
Medtr0019s0160 2.0kb upstream 2.0kb upstream 5079   true scaffold0019: 101555-106633 Medicago truncatula
Medtr0019s0160 2.0kb upstream 2.0kb upstream 2000   false scaffold0019: 101555-103554 Medicago truncatula
Medtr0019s0160 2.0kb downstream 2.0kb downstream 5079   true scaffold0019: 103555-108633 Medicago truncatula
Medtr0019s0160 2.0kb downstream 2.0kb downstream 2000   false scaffold0019: 106634-108633 Medicago truncatula
Medtr0019s0160 5.0kb upstream 5.0kb upstream 8079   true scaffold0019: 98555-106633 Medicago truncatula
Medtr0019s0160 5.0kb upstream 5.0kb upstream 5000   false scaffold0019: 98555-103554 Medicago truncatula
Medtr0019s0160 5.0kb downstream 5.0kb downstream 8079   true scaffold0019: 103555-111633 Medicago truncatula
Medtr0019s0160 5.0kb downstream 5.0kb downstream 5000   false scaffold0019: 106634-111633 Medicago truncatula
Medtr0019s0160 10.0kb upstream 10.0kb upstream 13079   true scaffold0019: 93555-106633 Medicago truncatula
Medtr0019s0160 10.0kb upstream 10.0kb upstream 10000   false scaffold0019: 93555-103554 Medicago truncatula
Medtr0019s0160 10.0kb downstream 10.0kb downstream 13079   true scaffold0019: 103555-116633 Medicago truncatula
Medtr0019s0160 10.0kb downstream 10.0kb downstream 10000   false scaffold0019: 106634-116633 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312605 5265 Fabidae View MSA
124071266 5270 Rosid View MSA
123737177 5271 Pentapetalae View MSA
122793068 5272 Eudicot View MSA
122041807 5273 Angiosperm View MSA
121346108 5274 Embryophyte View MSA
123427545 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.198        
cufflinks 0.111       Low
cufflinks 0.211        
cufflinks 0.067     Low Low
cufflinks 0.383        
cufflinks 0.473       High
cufflinks 0.513       High
cufflinks 0.275        
cufflinks 0.314        

0 Strain