Gene : Medtr0020s0020 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10015:SF168 - HEAT STRESS TRANSCRIPTION FACTOR B-2A Description:  heat shock transcription factor B2A
Genomic Order:  1 Name:  ? Medtr0020s0020
Secondary Identifier:  ? PAC:31092421
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0020s0020 0.5kb upstream 0.5kb upstream 3134   true scaffold0020: 8085-11218 Medicago truncatula
Medtr0020s0020 0.5kb upstream 0.5kb upstream 500   false scaffold0020: 8085-8584 Medicago truncatula
Medtr0020s0020 0.5kb downstream 0.5kb downstream 3134   true scaffold0020: 8585-11718 Medicago truncatula
Medtr0020s0020 0.5kb downstream 0.5kb downstream 500   false scaffold0020: 11219-11718 Medicago truncatula
Medtr0020s0020 1.0kb upstream 1.0kb upstream 3634   true scaffold0020: 7585-11218 Medicago truncatula
Medtr0020s0020 1.0kb upstream 1.0kb upstream 1000   false scaffold0020: 7585-8584 Medicago truncatula
Medtr0020s0020 1.0kb downstream 1.0kb downstream 3634   true scaffold0020: 8585-12218 Medicago truncatula
Medtr0020s0020 1.0kb downstream 1.0kb downstream 1000   false scaffold0020: 11219-12218 Medicago truncatula
Medtr0020s0020 2.0kb upstream 2.0kb upstream 4634   true scaffold0020: 6585-11218 Medicago truncatula
Medtr0020s0020 2.0kb upstream 2.0kb upstream 2000   false scaffold0020: 6585-8584 Medicago truncatula
Medtr0020s0020 2.0kb downstream 2.0kb downstream 4634   true scaffold0020: 8585-13218 Medicago truncatula
Medtr0020s0020 2.0kb downstream 2.0kb downstream 2000   false scaffold0020: 11219-13218 Medicago truncatula
Medtr0020s0020 5.0kb upstream 5.0kb upstream 7634   true scaffold0020: 3585-11218 Medicago truncatula
Medtr0020s0020 5.0kb upstream 5.0kb upstream 5000   false scaffold0020: 3585-8584 Medicago truncatula
Medtr0020s0020 5.0kb downstream 5.0kb downstream 7634   true scaffold0020: 8585-16218 Medicago truncatula
Medtr0020s0020 5.0kb downstream 5.0kb downstream 5000   false scaffold0020: 11219-16218 Medicago truncatula
Medtr0020s0020 10.0kb upstream 10.0kb upstream 11218   true scaffold0020: 1-11218 Medicago truncatula
Medtr0020s0020 10.0kb upstream 10.0kb upstream 8584   false scaffold0020: 1-8584 Medicago truncatula
Medtr0020s0020 10.0kb downstream 10.0kb downstream 12634   true scaffold0020: 8585-21218 Medicago truncatula
Medtr0020s0020 10.0kb downstream 10.0kb downstream 10000   false scaffold0020: 11219-21218 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307656 5265 Fabidae View MSA
124071788 5270 Rosid View MSA
123750823 5271 Pentapetalae View MSA
122797389 5272 Eudicot View MSA
122047819 5273 Angiosperm View MSA
121349623 5274 Embryophyte View MSA
123428852 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.375     High  
cufflinks 4.346       Low
cufflinks 5.218        
cufflinks 28.748     High  
cufflinks 3.987       Low
cufflinks 41.859     High High
cufflinks 18.498     High  
cufflinks 4.06       Low
cufflinks 26.538     High  

0 Strain