Gene : Medtr0019s0210 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  17 Name:  ? Medtr0019s0210
Secondary Identifier:  ? PAC:31092161
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0019s0210 0.5kb upstream 0.5kb upstream 2165   true scaffold0019: 125664-127828 Medicago truncatula
Medtr0019s0210 0.5kb upstream 0.5kb upstream 500   false scaffold0019: 127329-127828 Medicago truncatula
Medtr0019s0210 0.5kb downstream 0.5kb downstream 2165   true scaffold0019: 125164-127328 Medicago truncatula
Medtr0019s0210 0.5kb downstream 0.5kb downstream 500   false scaffold0019: 125164-125663 Medicago truncatula
Medtr0019s0210 1.0kb upstream 1.0kb upstream 2665   true scaffold0019: 125664-128328 Medicago truncatula
Medtr0019s0210 1.0kb upstream 1.0kb upstream 1000   false scaffold0019: 127329-128328 Medicago truncatula
Medtr0019s0210 1.0kb downstream 1.0kb downstream 2665   true scaffold0019: 124664-127328 Medicago truncatula
Medtr0019s0210 1.0kb downstream 1.0kb downstream 1000   false scaffold0019: 124664-125663 Medicago truncatula
Medtr0019s0210 2.0kb upstream 2.0kb upstream 3665   true scaffold0019: 125664-129328 Medicago truncatula
Medtr0019s0210 2.0kb upstream 2.0kb upstream 2000   false scaffold0019: 127329-129328 Medicago truncatula
Medtr0019s0210 2.0kb downstream 2.0kb downstream 3665   true scaffold0019: 123664-127328 Medicago truncatula
Medtr0019s0210 2.0kb downstream 2.0kb downstream 2000   false scaffold0019: 123664-125663 Medicago truncatula
Medtr0019s0210 5.0kb upstream 5.0kb upstream 6665   true scaffold0019: 125664-132328 Medicago truncatula
Medtr0019s0210 5.0kb upstream 5.0kb upstream 5000   false scaffold0019: 127329-132328 Medicago truncatula
Medtr0019s0210 5.0kb downstream 5.0kb downstream 6665   true scaffold0019: 120664-127328 Medicago truncatula
Medtr0019s0210 5.0kb downstream 5.0kb downstream 5000   false scaffold0019: 120664-125663 Medicago truncatula
Medtr0019s0210 10.0kb upstream 10.0kb upstream 11665   true scaffold0019: 125664-137328 Medicago truncatula
Medtr0019s0210 10.0kb upstream 10.0kb upstream 10000   false scaffold0019: 127329-137328 Medicago truncatula
Medtr0019s0210 10.0kb downstream 10.0kb downstream 11665   true scaffold0019: 115664-127328 Medicago truncatula
Medtr0019s0210 10.0kb downstream 10.0kb downstream 10000   false scaffold0019: 115664-125663 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.103       High
cufflinks 0.021     Low  
cufflinks 0.019     Low  
cufflinks 0.005     Low Low
cufflinks 0.034     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.032     Low  
cufflinks 0.021     Low  

0 Strain