Gene : Medtr8g463280 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Description:  homogentisate 1,2-dioxygenase
Genomic Order:  2665 Name:  ? Medtr8g463280
Secondary Identifier:  ? PAC:31073389
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g463280 0.5kb upstream 0.5kb upstream 5979   true chr8: 22275480-22281458 Medicago truncatula
Medtr8g463280 0.5kb upstream 0.5kb upstream 500   false chr8: 22275480-22275979 Medicago truncatula
Medtr8g463280 0.5kb downstream 0.5kb downstream 5979   true chr8: 22275980-22281958 Medicago truncatula
Medtr8g463280 0.5kb downstream 0.5kb downstream 500   false chr8: 22281459-22281958 Medicago truncatula
Medtr8g463280 1.0kb upstream 1.0kb upstream 6479   true chr8: 22274980-22281458 Medicago truncatula
Medtr8g463280 1.0kb upstream 1.0kb upstream 1000   false chr8: 22274980-22275979 Medicago truncatula
Medtr8g463280 1.0kb downstream 1.0kb downstream 6479   true chr8: 22275980-22282458 Medicago truncatula
Medtr8g463280 1.0kb downstream 1.0kb downstream 1000   false chr8: 22281459-22282458 Medicago truncatula
Medtr8g463280 2.0kb upstream 2.0kb upstream 7479   true chr8: 22273980-22281458 Medicago truncatula
Medtr8g463280 2.0kb upstream 2.0kb upstream 2000   false chr8: 22273980-22275979 Medicago truncatula
Medtr8g463280 2.0kb downstream 2.0kb downstream 7479   true chr8: 22275980-22283458 Medicago truncatula
Medtr8g463280 2.0kb downstream 2.0kb downstream 2000   false chr8: 22281459-22283458 Medicago truncatula
Medtr8g463280 5.0kb upstream 5.0kb upstream 10479   true chr8: 22270980-22281458 Medicago truncatula
Medtr8g463280 5.0kb upstream 5.0kb upstream 5000   false chr8: 22270980-22275979 Medicago truncatula
Medtr8g463280 5.0kb downstream 5.0kb downstream 10479   true chr8: 22275980-22286458 Medicago truncatula
Medtr8g463280 5.0kb downstream 5.0kb downstream 5000   false chr8: 22281459-22286458 Medicago truncatula
Medtr8g463280 10.0kb upstream 10.0kb upstream 15479   true chr8: 22265980-22281458 Medicago truncatula
Medtr8g463280 10.0kb upstream 10.0kb upstream 10000   false chr8: 22265980-22275979 Medicago truncatula
Medtr8g463280 10.0kb downstream 10.0kb downstream 15479   true chr8: 22275980-22291458 Medicago truncatula
Medtr8g463280 10.0kb downstream 10.0kb downstream 10000   false chr8: 22281459-22291458 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302891 5265 Fabidae View MSA
124064618 5270 Rosid View MSA
123740810 5271 Pentapetalae View MSA
122786399 5272 Eudicot View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.888     High High
cufflinks 8.16        
cufflinks 10.214     High  
cufflinks 9.52     High  
cufflinks 2.895       Low
cufflinks 6.546        
cufflinks 7.813        
cufflinks 8.856        
cufflinks 5.134        

0 Strain