Gene : Medtr8g465890 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR24015:SF644 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Description:  PPR containing plant protein
Genomic Order:  2778 Name:  ? Medtr8g465890
Secondary Identifier:  ? PAC:31073311
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g465890 0.5kb upstream 0.5kb upstream 5498   true chr8: 23497712-23503209 Medicago truncatula
Medtr8g465890 0.5kb upstream 0.5kb upstream 500   false chr8: 23497712-23498211 Medicago truncatula
Medtr8g465890 0.5kb downstream 0.5kb downstream 5498   true chr8: 23498212-23503709 Medicago truncatula
Medtr8g465890 0.5kb downstream 0.5kb downstream 500   false chr8: 23503210-23503709 Medicago truncatula
Medtr8g465890 1.0kb upstream 1.0kb upstream 5998   true chr8: 23497212-23503209 Medicago truncatula
Medtr8g465890 1.0kb upstream 1.0kb upstream 1000   false chr8: 23497212-23498211 Medicago truncatula
Medtr8g465890 1.0kb downstream 1.0kb downstream 5998   true chr8: 23498212-23504209 Medicago truncatula
Medtr8g465890 1.0kb downstream 1.0kb downstream 1000   false chr8: 23503210-23504209 Medicago truncatula
Medtr8g465890 2.0kb upstream 2.0kb upstream 6998   true chr8: 23496212-23503209 Medicago truncatula
Medtr8g465890 2.0kb upstream 2.0kb upstream 2000   false chr8: 23496212-23498211 Medicago truncatula
Medtr8g465890 2.0kb downstream 2.0kb downstream 6998   true chr8: 23498212-23505209 Medicago truncatula
Medtr8g465890 2.0kb downstream 2.0kb downstream 2000   false chr8: 23503210-23505209 Medicago truncatula
Medtr8g465890 5.0kb upstream 5.0kb upstream 9998   true chr8: 23493212-23503209 Medicago truncatula
Medtr8g465890 5.0kb upstream 5.0kb upstream 5000   false chr8: 23493212-23498211 Medicago truncatula
Medtr8g465890 5.0kb downstream 5.0kb downstream 9998   true chr8: 23498212-23508209 Medicago truncatula
Medtr8g465890 5.0kb downstream 5.0kb downstream 5000   false chr8: 23503210-23508209 Medicago truncatula
Medtr8g465890 10.0kb upstream 10.0kb upstream 14998   true chr8: 23488212-23503209 Medicago truncatula
Medtr8g465890 10.0kb upstream 10.0kb upstream 10000   false chr8: 23488212-23498211 Medicago truncatula
Medtr8g465890 10.0kb downstream 10.0kb downstream 14998   true chr8: 23498212-23513209 Medicago truncatula
Medtr8g465890 10.0kb downstream 10.0kb downstream 10000   false chr8: 23503210-23513209 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313688 5265 Fabidae View MSA
124071698 5270 Rosid View MSA
123743334 5271 Pentapetalae View MSA
122796848 5272 Eudicot View MSA
122049142 5273 Angiosperm View MSA
121311265 5274 Embryophyte View MSA
123348580 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.297        
cufflinks 0.297        
cufflinks 0.277        
cufflinks 0.086       Low
cufflinks 0.55       High
cufflinks 0.076     Low Low
cufflinks 0.13        
cufflinks 0.317        
cufflinks 0.093     Low Low

0 Strain