Gene : Medtr8g103680 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23249:SF15 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4 Description:  trafficking protein particle complex subunit-like protein
Genomic Order:  5528 Name:  ? Medtr8g103680
Secondary Identifier:  ? PAC:31076211
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g103680 0.5kb upstream 0.5kb upstream 2693   true chr8: 43629016-43631708 Medicago truncatula
Medtr8g103680 0.5kb upstream 0.5kb upstream 500   false chr8: 43631209-43631708 Medicago truncatula
Medtr8g103680 0.5kb downstream 0.5kb downstream 2693   true chr8: 43628516-43631208 Medicago truncatula
Medtr8g103680 0.5kb downstream 0.5kb downstream 500   false chr8: 43628516-43629015 Medicago truncatula
Medtr8g103680 1.0kb upstream 1.0kb upstream 3193   true chr8: 43629016-43632208 Medicago truncatula
Medtr8g103680 1.0kb upstream 1.0kb upstream 1000   false chr8: 43631209-43632208 Medicago truncatula
Medtr8g103680 1.0kb downstream 1.0kb downstream 3193   true chr8: 43628016-43631208 Medicago truncatula
Medtr8g103680 1.0kb downstream 1.0kb downstream 1000   false chr8: 43628016-43629015 Medicago truncatula
Medtr8g103680 2.0kb upstream 2.0kb upstream 4193   true chr8: 43629016-43633208 Medicago truncatula
Medtr8g103680 2.0kb upstream 2.0kb upstream 2000   false chr8: 43631209-43633208 Medicago truncatula
Medtr8g103680 2.0kb downstream 2.0kb downstream 4193   true chr8: 43627016-43631208 Medicago truncatula
Medtr8g103680 2.0kb downstream 2.0kb downstream 2000   false chr8: 43627016-43629015 Medicago truncatula
Medtr8g103680 5.0kb upstream 5.0kb upstream 7193   true chr8: 43629016-43636208 Medicago truncatula
Medtr8g103680 5.0kb upstream 5.0kb upstream 5000   false chr8: 43631209-43636208 Medicago truncatula
Medtr8g103680 5.0kb downstream 5.0kb downstream 7193   true chr8: 43624016-43631208 Medicago truncatula
Medtr8g103680 5.0kb downstream 5.0kb downstream 5000   false chr8: 43624016-43629015 Medicago truncatula
Medtr8g103680 10.0kb upstream 10.0kb upstream 12193   true chr8: 43629016-43641208 Medicago truncatula
Medtr8g103680 10.0kb upstream 10.0kb upstream 10000   false chr8: 43631209-43641208 Medicago truncatula
Medtr8g103680 10.0kb downstream 10.0kb downstream 12193   true chr8: 43619016-43631208 Medicago truncatula
Medtr8g103680 10.0kb downstream 10.0kb downstream 10000   false chr8: 43619016-43629015 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122269952 5265 Fabidae Singleton cluster - no MSA
124062773 5270 Rosid View MSA
123740967 5271 Pentapetalae View MSA
122786625 5272 Eudicot View MSA
122043161 5273 Angiosperm View MSA
121347078 5274 Embryophyte View MSA
123424121 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.903       Low
cufflinks 8.216        
cufflinks 11.164     High High
cufflinks 8.161        
cufflinks 7.603        
cufflinks 7.713        
cufflinks 5.954        
cufflinks 8.983     High  
cufflinks 5.483        

0 Strain