Gene : Medtr8g104740 M. truncatula Mt4.0v1
Defline:  (1 of 6) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Description:  aspartyl/asparaginyl-tRNA synthetase family protein
Genomic Order:  5592 Name:  ? Medtr8g104740
Secondary Identifier:  ? PAC:31073120
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g104740 0.5kb upstream 0.5kb upstream 8398   true chr8: 44107664-44116061 Medicago truncatula
Medtr8g104740 0.5kb upstream 0.5kb upstream 500   false chr8: 44115562-44116061 Medicago truncatula
Medtr8g104740 0.5kb downstream 0.5kb downstream 8398   true chr8: 44107164-44115561 Medicago truncatula
Medtr8g104740 0.5kb downstream 0.5kb downstream 500   false chr8: 44107164-44107663 Medicago truncatula
Medtr8g104740 1.0kb upstream 1.0kb upstream 8898   true chr8: 44107664-44116561 Medicago truncatula
Medtr8g104740 1.0kb upstream 1.0kb upstream 1000   false chr8: 44115562-44116561 Medicago truncatula
Medtr8g104740 1.0kb downstream 1.0kb downstream 8898   true chr8: 44106664-44115561 Medicago truncatula
Medtr8g104740 1.0kb downstream 1.0kb downstream 1000   false chr8: 44106664-44107663 Medicago truncatula
Medtr8g104740 2.0kb upstream 2.0kb upstream 9898   true chr8: 44107664-44117561 Medicago truncatula
Medtr8g104740 2.0kb upstream 2.0kb upstream 2000   false chr8: 44115562-44117561 Medicago truncatula
Medtr8g104740 2.0kb downstream 2.0kb downstream 9898   true chr8: 44105664-44115561 Medicago truncatula
Medtr8g104740 2.0kb downstream 2.0kb downstream 2000   false chr8: 44105664-44107663 Medicago truncatula
Medtr8g104740 5.0kb upstream 5.0kb upstream 12898   true chr8: 44107664-44120561 Medicago truncatula
Medtr8g104740 5.0kb upstream 5.0kb upstream 5000   false chr8: 44115562-44120561 Medicago truncatula
Medtr8g104740 5.0kb downstream 5.0kb downstream 12898   true chr8: 44102664-44115561 Medicago truncatula
Medtr8g104740 5.0kb downstream 5.0kb downstream 5000   false chr8: 44102664-44107663 Medicago truncatula
Medtr8g104740 10.0kb upstream 10.0kb upstream 17898   true chr8: 44107664-44125561 Medicago truncatula
Medtr8g104740 10.0kb upstream 10.0kb upstream 10000   false chr8: 44115562-44125561 Medicago truncatula
Medtr8g104740 10.0kb downstream 10.0kb downstream 17898   true chr8: 44097664-44115561 Medicago truncatula
Medtr8g104740 10.0kb downstream 10.0kb downstream 10000   false chr8: 44097664-44107663 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304269 5265 Fabidae View MSA
124067030 5270 Rosid View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.134        
cufflinks 0.557       High
cufflinks 0.516        
cufflinks 0.064     Low  
cufflinks 0.55        
cufflinks 0.038     Low Low
cufflinks 0.079        
cufflinks 0.617       High
cufflinks 0.058     Low  

0 Strain