Gene : Medtr8g105930 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31065:SF15 - PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN Description:  PLATZ transcription factor family protein
Genomic Order:  5662 Name:  ? Medtr8g105930
Secondary Identifier:  ? PAC:31070700
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g105930 0.5kb upstream 0.5kb upstream 2659   true chr8: 44713414-44716072 Medicago truncatula
Medtr8g105930 0.5kb upstream 0.5kb upstream 500   false chr8: 44713414-44713913 Medicago truncatula
Medtr8g105930 0.5kb downstream 0.5kb downstream 2659   true chr8: 44713914-44716572 Medicago truncatula
Medtr8g105930 0.5kb downstream 0.5kb downstream 500   false chr8: 44716073-44716572 Medicago truncatula
Medtr8g105930 1.0kb upstream 1.0kb upstream 3159   true chr8: 44712914-44716072 Medicago truncatula
Medtr8g105930 1.0kb upstream 1.0kb upstream 1000   false chr8: 44712914-44713913 Medicago truncatula
Medtr8g105930 1.0kb downstream 1.0kb downstream 3159   true chr8: 44713914-44717072 Medicago truncatula
Medtr8g105930 1.0kb downstream 1.0kb downstream 1000   false chr8: 44716073-44717072 Medicago truncatula
Medtr8g105930 2.0kb upstream 2.0kb upstream 4159   true chr8: 44711914-44716072 Medicago truncatula
Medtr8g105930 2.0kb upstream 2.0kb upstream 2000   false chr8: 44711914-44713913 Medicago truncatula
Medtr8g105930 2.0kb downstream 2.0kb downstream 4159   true chr8: 44713914-44718072 Medicago truncatula
Medtr8g105930 2.0kb downstream 2.0kb downstream 2000   false chr8: 44716073-44718072 Medicago truncatula
Medtr8g105930 5.0kb upstream 5.0kb upstream 7159   true chr8: 44708914-44716072 Medicago truncatula
Medtr8g105930 5.0kb upstream 5.0kb upstream 5000   false chr8: 44708914-44713913 Medicago truncatula
Medtr8g105930 5.0kb downstream 5.0kb downstream 7159   true chr8: 44713914-44721072 Medicago truncatula
Medtr8g105930 5.0kb downstream 5.0kb downstream 5000   false chr8: 44716073-44721072 Medicago truncatula
Medtr8g105930 10.0kb upstream 10.0kb upstream 12159   true chr8: 44703914-44716072 Medicago truncatula
Medtr8g105930 10.0kb upstream 10.0kb upstream 10000   false chr8: 44703914-44713913 Medicago truncatula
Medtr8g105930 10.0kb downstream 10.0kb downstream 12159   true chr8: 44713914-44726072 Medicago truncatula
Medtr8g105930 10.0kb downstream 10.0kb downstream 10000   false chr8: 44716073-44726072 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791790 5273 Angiosperm View MSA
122307174 5265 Fabidae View MSA
124061257 5270 Rosid View MSA
123743284 5271 Pentapetalae View MSA
122793533 5272 Eudicot View MSA
121063080 5274 Embryophyte View MSA
123102864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.36       High
cufflinks 1.318        
cufflinks 1.204        
cufflinks 2.621        
cufflinks 0.753       Low
cufflinks 3.104        
cufflinks 3.971        
cufflinks 0.97       Low
cufflinks 4.737        

0 Strain