Gene : Medtr1169s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF14521 - Lysine-specific metallo-endopeptidase (Aspzincin_M35) Description:  OmpA family protein
Genomic Order:  1 Name:  ? Medtr1169s0010
Secondary Identifier:  ? PAC:31101031
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1169s0010 0.5kb upstream 0.5kb upstream 2089 true scaffold1169: 444-2532 Medicago truncatula
Medtr1169s0010 0.5kb upstream 0.5kb upstream 500 false scaffold1169: 2033-2532 Medicago truncatula
Medtr1169s0010 0.5kb downstream 0.5kb downstream 2032 true scaffold1169: 1-2032 Medicago truncatula
Medtr1169s0010 0.5kb downstream 0.5kb downstream 443 false scaffold1169: 1-443 Medicago truncatula
Medtr1169s0010 1.0kb upstream 1.0kb upstream 2113 true scaffold1169: 444-2556 Medicago truncatula
Medtr1169s0010 1.0kb upstream 1.0kb upstream 524 false scaffold1169: 2033-2556 Medicago truncatula
Medtr1169s0010 1.0kb downstream 1.0kb downstream 2032 true scaffold1169: 1-2032 Medicago truncatula
Medtr1169s0010 1.0kb downstream 1.0kb downstream 443 false scaffold1169: 1-443 Medicago truncatula
Medtr1169s0010 2.0kb upstream 2.0kb upstream 2113 true scaffold1169: 444-2556 Medicago truncatula
Medtr1169s0010 2.0kb upstream 2.0kb upstream 524 false scaffold1169: 2033-2556 Medicago truncatula
Medtr1169s0010 2.0kb downstream 2.0kb downstream 2032 true scaffold1169: 1-2032 Medicago truncatula
Medtr1169s0010 2.0kb downstream 2.0kb downstream 443 false scaffold1169: 1-443 Medicago truncatula
Medtr1169s0010 5.0kb upstream 5.0kb upstream 2113 true scaffold1169: 444-2556 Medicago truncatula
Medtr1169s0010 5.0kb upstream 5.0kb upstream 524 false scaffold1169: 2033-2556 Medicago truncatula
Medtr1169s0010 5.0kb downstream 5.0kb downstream 2032 true scaffold1169: 1-2032 Medicago truncatula
Medtr1169s0010 5.0kb downstream 5.0kb downstream 443 false scaffold1169: 1-443 Medicago truncatula
Medtr1169s0010 10.0kb upstream 10.0kb upstream 2113 true scaffold1169: 444-2556 Medicago truncatula
Medtr1169s0010 10.0kb upstream 10.0kb upstream 524 false scaffold1169: 2033-2556 Medicago truncatula
Medtr1169s0010 10.0kb downstream 10.0kb downstream 2032 true scaffold1169: 1-2032 Medicago truncatula
Medtr1169s0010 10.0kb downstream 10.0kb downstream 443 false scaffold1169: 1-443 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632316 5273 Angiosperm Singleton cluster - no MSA
122271008 5265 Fabidae Singleton cluster - no MSA
124011673 5270 Rosid Singleton cluster - no MSA
123585572 5271 Pentapetalae Singleton cluster - no MSA
122620269 5272 Eudicot Singleton cluster - no MSA
120904420 5274 Embryophyte Singleton cluster - no MSA
122945071 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain