Gene : Medtr1614s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF11 - ATP-DEPENDENT CLP PROTEASE Description:  type VI secretion ATPase, ClpV1 family protein
Genomic Order:  1 Name:  ? Medtr1614s0010
Secondary Identifier:  ? PAC:31092099
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1614s0010 0.5kb upstream 0.5kb upstream 680 true scaffold1614: 1-680 Medicago truncatula
Medtr1614s0010 0.5kb upstream 0.5kb upstream 95 false scaffold1614: 1-95 Medicago truncatula
Medtr1614s0010 0.5kb downstream 0.5kb downstream 1085 true scaffold1614: 96-1180 Medicago truncatula
Medtr1614s0010 0.5kb downstream 0.5kb downstream 500 false scaffold1614: 681-1180 Medicago truncatula
Medtr1614s0010 1.0kb upstream 1.0kb upstream 680 true scaffold1614: 1-680 Medicago truncatula
Medtr1614s0010 1.0kb upstream 1.0kb upstream 95 false scaffold1614: 1-95 Medicago truncatula
Medtr1614s0010 1.0kb downstream 1.0kb downstream 1473 true scaffold1614: 96-1568 Medicago truncatula
Medtr1614s0010 1.0kb downstream 1.0kb downstream 888 false scaffold1614: 681-1568 Medicago truncatula
Medtr1614s0010 2.0kb upstream 2.0kb upstream 680 true scaffold1614: 1-680 Medicago truncatula
Medtr1614s0010 2.0kb upstream 2.0kb upstream 95 false scaffold1614: 1-95 Medicago truncatula
Medtr1614s0010 2.0kb downstream 2.0kb downstream 1473 true scaffold1614: 96-1568 Medicago truncatula
Medtr1614s0010 2.0kb downstream 2.0kb downstream 888 false scaffold1614: 681-1568 Medicago truncatula
Medtr1614s0010 5.0kb upstream 5.0kb upstream 680 true scaffold1614: 1-680 Medicago truncatula
Medtr1614s0010 5.0kb upstream 5.0kb upstream 95 false scaffold1614: 1-95 Medicago truncatula
Medtr1614s0010 5.0kb downstream 5.0kb downstream 1473 true scaffold1614: 96-1568 Medicago truncatula
Medtr1614s0010 5.0kb downstream 5.0kb downstream 888 false scaffold1614: 681-1568 Medicago truncatula
Medtr1614s0010 10.0kb upstream 10.0kb upstream 680 true scaffold1614: 1-680 Medicago truncatula
Medtr1614s0010 10.0kb upstream 10.0kb upstream 95 false scaffold1614: 1-95 Medicago truncatula
Medtr1614s0010 10.0kb downstream 10.0kb downstream 1473 true scaffold1614: 96-1568 Medicago truncatula
Medtr1614s0010 10.0kb downstream 10.0kb downstream 888 false scaffold1614: 681-1568 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122271113 5265 Fabidae Singleton cluster - no MSA
124037527 5270 Rosid View MSA
123753557 5271 Pentapetalae View MSA
122775146 5272 Eudicot View MSA
122050456 5273 Angiosperm View MSA
121347252 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain