Gene : Medtr1779s0010 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12220//PTHR12220:SF14 - 50S/60S RIBOSOMAL PROTEIN L16 Description:  50S ribosomal protein L16
Genomic Order:  1 Name:  ? Medtr1779s0010
Secondary Identifier:  ? PAC:31076879
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1779s0010 0.5kb upstream 0.5kb upstream 529 true scaffold1779: 1-529 Medicago truncatula
Medtr1779s0010 0.5kb upstream 0.5kb upstream 169 false scaffold1779: 1-169 Medicago truncatula
Medtr1779s0010 0.5kb downstream 0.5kb downstream 860 true scaffold1779: 170-1029 Medicago truncatula
Medtr1779s0010 0.5kb downstream 0.5kb downstream 500 false scaffold1779: 530-1029 Medicago truncatula
Medtr1779s0010 1.0kb upstream 1.0kb upstream 529 true scaffold1779: 1-529 Medicago truncatula
Medtr1779s0010 1.0kb upstream 1.0kb upstream 169 false scaffold1779: 1-169 Medicago truncatula
Medtr1779s0010 1.0kb downstream 1.0kb downstream 1200 true scaffold1779: 170-1369 Medicago truncatula
Medtr1779s0010 1.0kb downstream 1.0kb downstream 840 false scaffold1779: 530-1369 Medicago truncatula
Medtr1779s0010 2.0kb upstream 2.0kb upstream 529 true scaffold1779: 1-529 Medicago truncatula
Medtr1779s0010 2.0kb upstream 2.0kb upstream 169 false scaffold1779: 1-169 Medicago truncatula
Medtr1779s0010 2.0kb downstream 2.0kb downstream 1200 true scaffold1779: 170-1369 Medicago truncatula
Medtr1779s0010 2.0kb downstream 2.0kb downstream 840 false scaffold1779: 530-1369 Medicago truncatula
Medtr1779s0010 5.0kb upstream 5.0kb upstream 529 true scaffold1779: 1-529 Medicago truncatula
Medtr1779s0010 5.0kb upstream 5.0kb upstream 169 false scaffold1779: 1-169 Medicago truncatula
Medtr1779s0010 5.0kb downstream 5.0kb downstream 1200 true scaffold1779: 170-1369 Medicago truncatula
Medtr1779s0010 5.0kb downstream 5.0kb downstream 840 false scaffold1779: 530-1369 Medicago truncatula
Medtr1779s0010 10.0kb upstream 10.0kb upstream 529 true scaffold1779: 1-529 Medicago truncatula
Medtr1779s0010 10.0kb upstream 10.0kb upstream 169 false scaffold1779: 1-169 Medicago truncatula
Medtr1779s0010 10.0kb downstream 10.0kb downstream 1200 true scaffold1779: 170-1369 Medicago truncatula
Medtr1779s0010 10.0kb downstream 10.0kb downstream 840 false scaffold1779: 530-1369 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122271142 5265 Fabidae Singleton cluster - no MSA
124050189 5270 Rosid View MSA
123748871 5271 Pentapetalae View MSA
122796002 5272 Eudicot View MSA
122041743 5273 Angiosperm View MSA
123429161 5275 Viridiplantae View MSA
121350825 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain