Gene : Medtr2176s0010 M. truncatula Mt4.0v1
Defline:  (1 of 8) PTHR23321//PTHR23321:SF33 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR Description:  ribulose bisphosphate carboxylase large chain
Genomic Order:  1 Name:  ? Medtr2176s0010
Secondary Identifier:  ? PAC:31101205
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CALVIN-PWY Medicago truncatula pathologic  
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5723 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2176s0010 0.5kb upstream 0.5kb upstream 812 true scaffold2176: 197-1008 Medicago truncatula
Medtr2176s0010 0.5kb upstream 0.5kb upstream 101 false scaffold2176: 908-1008 Medicago truncatula
Medtr2176s0010 0.5kb downstream 0.5kb downstream 907 true scaffold2176: 1-907 Medicago truncatula
Medtr2176s0010 0.5kb downstream 0.5kb downstream 196 false scaffold2176: 1-196 Medicago truncatula
Medtr2176s0010 1.0kb upstream 1.0kb upstream 812 true scaffold2176: 197-1008 Medicago truncatula
Medtr2176s0010 1.0kb upstream 1.0kb upstream 101 false scaffold2176: 908-1008 Medicago truncatula
Medtr2176s0010 1.0kb downstream 1.0kb downstream 907 true scaffold2176: 1-907 Medicago truncatula
Medtr2176s0010 1.0kb downstream 1.0kb downstream 196 false scaffold2176: 1-196 Medicago truncatula
Medtr2176s0010 2.0kb upstream 2.0kb upstream 812 true scaffold2176: 197-1008 Medicago truncatula
Medtr2176s0010 2.0kb upstream 2.0kb upstream 101 false scaffold2176: 908-1008 Medicago truncatula
Medtr2176s0010 2.0kb downstream 2.0kb downstream 907 true scaffold2176: 1-907 Medicago truncatula
Medtr2176s0010 2.0kb downstream 2.0kb downstream 196 false scaffold2176: 1-196 Medicago truncatula
Medtr2176s0010 5.0kb upstream 5.0kb upstream 812 true scaffold2176: 197-1008 Medicago truncatula
Medtr2176s0010 5.0kb upstream 5.0kb upstream 101 false scaffold2176: 908-1008 Medicago truncatula
Medtr2176s0010 5.0kb downstream 5.0kb downstream 907 true scaffold2176: 1-907 Medicago truncatula
Medtr2176s0010 5.0kb downstream 5.0kb downstream 196 false scaffold2176: 1-196 Medicago truncatula
Medtr2176s0010 10.0kb upstream 10.0kb upstream 812 true scaffold2176: 197-1008 Medicago truncatula
Medtr2176s0010 10.0kb upstream 10.0kb upstream 101 false scaffold2176: 908-1008 Medicago truncatula
Medtr2176s0010 10.0kb downstream 10.0kb downstream 907 true scaffold2176: 1-907 Medicago truncatula
Medtr2176s0010 10.0kb downstream 10.0kb downstream 196 false scaffold2176: 1-196 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313867 5265 Fabidae View MSA
124037716 5270 Rosid View MSA
123751375 5271 Pentapetalae View MSA
122794662 5272 Eudicot View MSA
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain