Gene : Medtr0388s0020 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31374:SF56 - AUXIN-REGULATED PROTEIN-RELATED Description:  SAUR-like auxin-responsive family protein
Genomic Order:  1 Name:  ? Medtr0388s0020
Secondary Identifier:  ? PAC:31101312
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0388s0020 0.5kb upstream 0.5kb upstream 1587 true scaffold0388: 7216-8802 Medicago truncatula
Medtr0388s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0388: 7216-7715 Medicago truncatula
Medtr0388s0020 0.5kb downstream 0.5kb downstream 1587 true scaffold0388: 7716-9302 Medicago truncatula
Medtr0388s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0388: 8803-9302 Medicago truncatula
Medtr0388s0020 1.0kb upstream 1.0kb upstream 2087 true scaffold0388: 6716-8802 Medicago truncatula
Medtr0388s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0388: 6716-7715 Medicago truncatula
Medtr0388s0020 1.0kb downstream 1.0kb downstream 2087 true scaffold0388: 7716-9802 Medicago truncatula
Medtr0388s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0388: 8803-9802 Medicago truncatula
Medtr0388s0020 2.0kb upstream 2.0kb upstream 3087 true scaffold0388: 5716-8802 Medicago truncatula
Medtr0388s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0388: 5716-7715 Medicago truncatula
Medtr0388s0020 2.0kb downstream 2.0kb downstream 3087 true scaffold0388: 7716-10802 Medicago truncatula
Medtr0388s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0388: 8803-10802 Medicago truncatula
Medtr0388s0020 5.0kb upstream 5.0kb upstream 6087 true scaffold0388: 2716-8802 Medicago truncatula
Medtr0388s0020 5.0kb upstream 5.0kb upstream 5000 false scaffold0388: 2716-7715 Medicago truncatula
Medtr0388s0020 5.0kb downstream 5.0kb downstream 6087 true scaffold0388: 7716-13802 Medicago truncatula
Medtr0388s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0388: 8803-13802 Medicago truncatula
Medtr0388s0020 10.0kb upstream 10.0kb upstream 8802 true scaffold0388: 1-8802 Medicago truncatula
Medtr0388s0020 10.0kb upstream 10.0kb upstream 7715 false scaffold0388: 1-7715 Medicago truncatula
Medtr0388s0020 10.0kb downstream 10.0kb downstream 8860 true scaffold0388: 7716-16575 Medicago truncatula
Medtr0388s0020 10.0kb downstream 10.0kb downstream 7773 false scaffold0388: 8803-16575 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301915 5265 Fabidae View MSA
124066518 5270 Rosid View MSA
123741344 5271 Pentapetalae View MSA
122791593 5272 Eudicot View MSA
122049926 5273 Angiosperm View MSA
121311651 5274 Embryophyte View MSA
123348921 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.806        
cufflinks 72.726     High High
cufflinks 56.969     High  
cufflinks 0.24       Low
cufflinks 95.182     High High
cufflinks 0.663        
cufflinks 1.403        
cufflinks 41.253     High  
cufflinks 0.657        

0 Strain