Gene : Medtr0397s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF03527 - RHS protein (RHS) Description:  type VI secretion system Vgr family protein
Genomic Order:  1 Name:  ? Medtr0397s0010
Secondary Identifier:  ? PAC:31106192
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0397s0010 0.5kb upstream 0.5kb upstream 12573 true scaffold0397: 1-12573 Medicago truncatula
Medtr0397s0010 0.5kb upstream 0.5kb upstream 95 false scaffold0397: 1-95 Medicago truncatula
Medtr0397s0010 0.5kb downstream 0.5kb downstream 12978 true scaffold0397: 96-13073 Medicago truncatula
Medtr0397s0010 0.5kb downstream 0.5kb downstream 500 false scaffold0397: 12574-13073 Medicago truncatula
Medtr0397s0010 1.0kb upstream 1.0kb upstream 12573 true scaffold0397: 1-12573 Medicago truncatula
Medtr0397s0010 1.0kb upstream 1.0kb upstream 95 false scaffold0397: 1-95 Medicago truncatula
Medtr0397s0010 1.0kb downstream 1.0kb downstream 13478 true scaffold0397: 96-13573 Medicago truncatula
Medtr0397s0010 1.0kb downstream 1.0kb downstream 1000 false scaffold0397: 12574-13573 Medicago truncatula
Medtr0397s0010 2.0kb upstream 2.0kb upstream 12573 true scaffold0397: 1-12573 Medicago truncatula
Medtr0397s0010 2.0kb upstream 2.0kb upstream 95 false scaffold0397: 1-95 Medicago truncatula
Medtr0397s0010 2.0kb downstream 2.0kb downstream 14478 true scaffold0397: 96-14573 Medicago truncatula
Medtr0397s0010 2.0kb downstream 2.0kb downstream 2000 false scaffold0397: 12574-14573 Medicago truncatula
Medtr0397s0010 5.0kb upstream 5.0kb upstream 12573 true scaffold0397: 1-12573 Medicago truncatula
Medtr0397s0010 5.0kb upstream 5.0kb upstream 95 false scaffold0397: 1-95 Medicago truncatula
Medtr0397s0010 5.0kb downstream 5.0kb downstream 16325 true scaffold0397: 96-16420 Medicago truncatula
Medtr0397s0010 5.0kb downstream 5.0kb downstream 3847 false scaffold0397: 12574-16420 Medicago truncatula
Medtr0397s0010 10.0kb upstream 10.0kb upstream 12573 true scaffold0397: 1-12573 Medicago truncatula
Medtr0397s0010 10.0kb upstream 10.0kb upstream 95 false scaffold0397: 1-95 Medicago truncatula
Medtr0397s0010 10.0kb downstream 10.0kb downstream 16325 true scaffold0397: 96-16420 Medicago truncatula
Medtr0397s0010 10.0kb downstream 10.0kb downstream 3847 false scaffold0397: 12574-16420 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632045 5273 Angiosperm Singleton cluster - no MSA
122270712 5265 Fabidae Singleton cluster - no MSA
124011400 5270 Rosid Singleton cluster - no MSA
123585300 5271 Pentapetalae Singleton cluster - no MSA
122619998 5272 Eudicot Singleton cluster - no MSA
120904149 5274 Embryophyte Singleton cluster - no MSA
122944804 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain