Gene : Medtr0449s0040 M. truncatula Mt4.0v1
Defline:  (1 of 3) 2.3.1.9 - Acetyl-CoA C-acetyltransferase / Acetoacetyl-CoA thiolase Description:  peroxisomal acetoacetyl-coenzyme A thiolase
Genomic Order:  2 Name:  ? Medtr0449s0040
Secondary Identifier:  ? PAC:31115420
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ILEUDEG-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5910 Medicago truncatula pathologic  
Mtruncatula PWY-922 Medicago truncatula pathologic  

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0449s0040 0.5kb upstream 0.5kb upstream 4575 true scaffold0449: 9098-13672 Medicago truncatula
Medtr0449s0040 0.5kb upstream 0.5kb upstream 500 false scaffold0449: 9098-9597 Medicago truncatula
Medtr0449s0040 0.5kb downstream 0.5kb downstream 4575 true scaffold0449: 9598-14172 Medicago truncatula
Medtr0449s0040 0.5kb downstream 0.5kb downstream 500 false scaffold0449: 13673-14172 Medicago truncatula
Medtr0449s0040 1.0kb upstream 1.0kb upstream 5075 true scaffold0449: 8598-13672 Medicago truncatula
Medtr0449s0040 1.0kb upstream 1.0kb upstream 1000 false scaffold0449: 8598-9597 Medicago truncatula
Medtr0449s0040 1.0kb downstream 1.0kb downstream 4757 true scaffold0449: 9598-14354 Medicago truncatula
Medtr0449s0040 1.0kb downstream 1.0kb downstream 682 false scaffold0449: 13673-14354 Medicago truncatula
Medtr0449s0040 2.0kb upstream 2.0kb upstream 6075 true scaffold0449: 7598-13672 Medicago truncatula
Medtr0449s0040 2.0kb upstream 2.0kb upstream 2000 false scaffold0449: 7598-9597 Medicago truncatula
Medtr0449s0040 2.0kb downstream 2.0kb downstream 4757 true scaffold0449: 9598-14354 Medicago truncatula
Medtr0449s0040 2.0kb downstream 2.0kb downstream 682 false scaffold0449: 13673-14354 Medicago truncatula
Medtr0449s0040 5.0kb upstream 5.0kb upstream 9075 true scaffold0449: 4598-13672 Medicago truncatula
Medtr0449s0040 5.0kb upstream 5.0kb upstream 5000 false scaffold0449: 4598-9597 Medicago truncatula
Medtr0449s0040 5.0kb downstream 5.0kb downstream 4757 true scaffold0449: 9598-14354 Medicago truncatula
Medtr0449s0040 5.0kb downstream 5.0kb downstream 682 false scaffold0449: 13673-14354 Medicago truncatula
Medtr0449s0040 10.0kb upstream 10.0kb upstream 13672 true scaffold0449: 1-13672 Medicago truncatula
Medtr0449s0040 10.0kb upstream 10.0kb upstream 9597 false scaffold0449: 1-9597 Medicago truncatula
Medtr0449s0040 10.0kb downstream 10.0kb downstream 4757 true scaffold0449: 9598-14354 Medicago truncatula
Medtr0449s0040 10.0kb downstream 10.0kb downstream 682 false scaffold0449: 13673-14354 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030992 5273 Angiosperm View MSA
122270756 5265 Fabidae Singleton cluster - no MSA
124040650 5270 Rosid View MSA
123755631 5271 Pentapetalae View MSA
122797958 5272 Eudicot View MSA
121300097 5274 Embryophyte View MSA
123427573 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.7        
cufflinks 2.431        
cufflinks 1.34       Low
cufflinks 12.573     High  
cufflinks 4.748        
cufflinks 10.24        
cufflinks 8.541        
cufflinks 1.571       Low
cufflinks 24.159     High High

0 Strain