Gene : Medtr0448s0020 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30258//PTHR30258:SF12 - TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED Description:  conjugative coupling factor TraD, SXT/TOL subfamily protein
Genomic Order:  2 Name:  ? Medtr0448s0020
Secondary Identifier:  ? PAC:31061954
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0448s0020 0.5kb upstream 0.5kb upstream 11226 true scaffold0448: 3099-14324 Medicago truncatula
Medtr0448s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0448: 3099-3598 Medicago truncatula
Medtr0448s0020 0.5kb downstream 0.5kb downstream 10766 true scaffold0448: 3599-14364 Medicago truncatula
Medtr0448s0020 0.5kb downstream 0.5kb downstream 40 false scaffold0448: 14325-14364 Medicago truncatula
Medtr0448s0020 1.0kb upstream 1.0kb upstream 11726 true scaffold0448: 2599-14324 Medicago truncatula
Medtr0448s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0448: 2599-3598 Medicago truncatula
Medtr0448s0020 1.0kb downstream 1.0kb downstream 10766 true scaffold0448: 3599-14364 Medicago truncatula
Medtr0448s0020 1.0kb downstream 1.0kb downstream 40 false scaffold0448: 14325-14364 Medicago truncatula
Medtr0448s0020 2.0kb upstream 2.0kb upstream 12726 true scaffold0448: 1599-14324 Medicago truncatula
Medtr0448s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0448: 1599-3598 Medicago truncatula
Medtr0448s0020 2.0kb downstream 2.0kb downstream 10766 true scaffold0448: 3599-14364 Medicago truncatula
Medtr0448s0020 2.0kb downstream 2.0kb downstream 40 false scaffold0448: 14325-14364 Medicago truncatula
Medtr0448s0020 5.0kb upstream 5.0kb upstream 14324 true scaffold0448: 1-14324 Medicago truncatula
Medtr0448s0020 5.0kb upstream 5.0kb upstream 3598 false scaffold0448: 1-3598 Medicago truncatula
Medtr0448s0020 5.0kb downstream 5.0kb downstream 10766 true scaffold0448: 3599-14364 Medicago truncatula
Medtr0448s0020 5.0kb downstream 5.0kb downstream 40 false scaffold0448: 14325-14364 Medicago truncatula
Medtr0448s0020 10.0kb upstream 10.0kb upstream 14324 true scaffold0448: 1-14324 Medicago truncatula
Medtr0448s0020 10.0kb upstream 10.0kb upstream 3598 false scaffold0448: 1-3598 Medicago truncatula
Medtr0448s0020 10.0kb downstream 10.0kb downstream 10766 true scaffold0448: 3599-14364 Medicago truncatula
Medtr0448s0020 10.0kb downstream 10.0kb downstream 40 false scaffold0448: 14325-14364 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632081 5273 Angiosperm Singleton cluster - no MSA
122270754 5265 Fabidae Singleton cluster - no MSA
124011436 5270 Rosid Singleton cluster - no MSA
123585336 5271 Pentapetalae Singleton cluster - no MSA
122620034 5272 Eudicot Singleton cluster - no MSA
120904185 5274 Embryophyte Singleton cluster - no MSA
122944840 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain