Gene : Medtr0542s0020 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR33228:SF3 - PROTEIN GLUTAMINE DUMPER 7 Description:  transmembrane protein, putative
Genomic Order:  2 Name:  ? Medtr0542s0020
Secondary Identifier:  ? PAC:31106203
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0542s0020 0.5kb upstream 0.5kb upstream 1262 true scaffold0542: 6926-8187 Medicago truncatula
Medtr0542s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0542: 7688-8187 Medicago truncatula
Medtr0542s0020 0.5kb downstream 0.5kb downstream 1262 true scaffold0542: 6426-7687 Medicago truncatula
Medtr0542s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0542: 6426-6925 Medicago truncatula
Medtr0542s0020 1.0kb upstream 1.0kb upstream 1762 true scaffold0542: 6926-8687 Medicago truncatula
Medtr0542s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0542: 7688-8687 Medicago truncatula
Medtr0542s0020 1.0kb downstream 1.0kb downstream 1762 true scaffold0542: 5926-7687 Medicago truncatula
Medtr0542s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0542: 5926-6925 Medicago truncatula
Medtr0542s0020 2.0kb upstream 2.0kb upstream 2762 true scaffold0542: 6926-9687 Medicago truncatula
Medtr0542s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0542: 7688-9687 Medicago truncatula
Medtr0542s0020 2.0kb downstream 2.0kb downstream 2762 true scaffold0542: 4926-7687 Medicago truncatula
Medtr0542s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0542: 4926-6925 Medicago truncatula
Medtr0542s0020 5.0kb upstream 5.0kb upstream 4417 true scaffold0542: 6926-11342 Medicago truncatula
Medtr0542s0020 5.0kb upstream 5.0kb upstream 3655 false scaffold0542: 7688-11342 Medicago truncatula
Medtr0542s0020 5.0kb downstream 5.0kb downstream 5762 true scaffold0542: 1926-7687 Medicago truncatula
Medtr0542s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0542: 1926-6925 Medicago truncatula
Medtr0542s0020 10.0kb upstream 10.0kb upstream 4417 true scaffold0542: 6926-11342 Medicago truncatula
Medtr0542s0020 10.0kb upstream 10.0kb upstream 3655 false scaffold0542: 7688-11342 Medicago truncatula
Medtr0542s0020 10.0kb downstream 10.0kb downstream 7687 true scaffold0542: 1-7687 Medicago truncatula
Medtr0542s0020 10.0kb downstream 10.0kb downstream 6925 false scaffold0542: 1-6925 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313286 5265 Fabidae View MSA
124071582 5270 Rosid View MSA
123752792 5271 Pentapetalae View MSA
122796809 5272 Eudicot View MSA
122048439 5273 Angiosperm View MSA
121310974 5274 Embryophyte View MSA
123348338 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.04     High High
cufflinks 1.618        
cufflinks 2.244        
cufflinks 3.228        
cufflinks 0.229       Low
cufflinks 13.899     High  
cufflinks 34.512     High High
cufflinks 2.18        
cufflinks 18.396     High  

0 Strain