Gene : Medtr0803s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30537 - HTH-TYPE TRANSCRIPTIONAL REGULATOR Description:  LysR family transcriptional regulator
Genomic Order:  1 Name:  ? Medtr0803s0010
Secondary Identifier:  ? PAC:31115422
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0803s0010 0.5kb upstream 0.5kb upstream 1463 true scaffold0803: 82-1544 Medicago truncatula
Medtr0803s0010 0.5kb upstream 0.5kb upstream 500 false scaffold0803: 1045-1544 Medicago truncatula
Medtr0803s0010 0.5kb downstream 0.5kb downstream 1044 true scaffold0803: 1-1044 Medicago truncatula
Medtr0803s0010 0.5kb downstream 0.5kb downstream 81 false scaffold0803: 1-81 Medicago truncatula
Medtr0803s0010 1.0kb upstream 1.0kb upstream 1963 true scaffold0803: 82-2044 Medicago truncatula
Medtr0803s0010 1.0kb upstream 1.0kb upstream 1000 false scaffold0803: 1045-2044 Medicago truncatula
Medtr0803s0010 1.0kb downstream 1.0kb downstream 1044 true scaffold0803: 1-1044 Medicago truncatula
Medtr0803s0010 1.0kb downstream 1.0kb downstream 81 false scaffold0803: 1-81 Medicago truncatula
Medtr0803s0010 2.0kb upstream 2.0kb upstream 2963 true scaffold0803: 82-3044 Medicago truncatula
Medtr0803s0010 2.0kb upstream 2.0kb upstream 2000 false scaffold0803: 1045-3044 Medicago truncatula
Medtr0803s0010 2.0kb downstream 2.0kb downstream 1044 true scaffold0803: 1-1044 Medicago truncatula
Medtr0803s0010 2.0kb downstream 2.0kb downstream 81 false scaffold0803: 1-81 Medicago truncatula
Medtr0803s0010 5.0kb upstream 5.0kb upstream 5881 true scaffold0803: 82-5962 Medicago truncatula
Medtr0803s0010 5.0kb upstream 5.0kb upstream 4918 false scaffold0803: 1045-5962 Medicago truncatula
Medtr0803s0010 5.0kb downstream 5.0kb downstream 1044 true scaffold0803: 1-1044 Medicago truncatula
Medtr0803s0010 5.0kb downstream 5.0kb downstream 81 false scaffold0803: 1-81 Medicago truncatula
Medtr0803s0010 10.0kb upstream 10.0kb upstream 5881 true scaffold0803: 82-5962 Medicago truncatula
Medtr0803s0010 10.0kb upstream 10.0kb upstream 4918 false scaffold0803: 1045-5962 Medicago truncatula
Medtr0803s0010 10.0kb downstream 10.0kb downstream 1044 true scaffold0803: 1-1044 Medicago truncatula
Medtr0803s0010 10.0kb downstream 10.0kb downstream 81 false scaffold0803: 1-81 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121657494 5273 Angiosperm View MSA
122270898 5265 Fabidae Singleton cluster - no MSA
124039400 5270 Rosid View MSA
123611297 5271 Pentapetalae View MSA
122645868 5272 Eudicot View MSA
120929535 5274 Embryophyte View MSA
122970093 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain