Gene : Medtr0787s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF07996 - Type IV secretion system proteins (T4SS) Description:  TrbL/VirB6 plasmid conjugal transfer protein
Genomic Order:  1 Name:  ? Medtr0787s0010
Secondary Identifier:  ? PAC:31106213
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0787s0010 0.5kb upstream 0.5kb upstream 6135 true scaffold0787: 125-6259 Medicago truncatula
Medtr0787s0010 0.5kb upstream 0.5kb upstream 461 false scaffold0787: 5799-6259 Medicago truncatula
Medtr0787s0010 0.5kb downstream 0.5kb downstream 5798 true scaffold0787: 1-5798 Medicago truncatula
Medtr0787s0010 0.5kb downstream 0.5kb downstream 124 false scaffold0787: 1-124 Medicago truncatula
Medtr0787s0010 1.0kb upstream 1.0kb upstream 6135 true scaffold0787: 125-6259 Medicago truncatula
Medtr0787s0010 1.0kb upstream 1.0kb upstream 461 false scaffold0787: 5799-6259 Medicago truncatula
Medtr0787s0010 1.0kb downstream 1.0kb downstream 5798 true scaffold0787: 1-5798 Medicago truncatula
Medtr0787s0010 1.0kb downstream 1.0kb downstream 124 false scaffold0787: 1-124 Medicago truncatula
Medtr0787s0010 2.0kb upstream 2.0kb upstream 6135 true scaffold0787: 125-6259 Medicago truncatula
Medtr0787s0010 2.0kb upstream 2.0kb upstream 461 false scaffold0787: 5799-6259 Medicago truncatula
Medtr0787s0010 2.0kb downstream 2.0kb downstream 5798 true scaffold0787: 1-5798 Medicago truncatula
Medtr0787s0010 2.0kb downstream 2.0kb downstream 124 false scaffold0787: 1-124 Medicago truncatula
Medtr0787s0010 5.0kb upstream 5.0kb upstream 6135 true scaffold0787: 125-6259 Medicago truncatula
Medtr0787s0010 5.0kb upstream 5.0kb upstream 461 false scaffold0787: 5799-6259 Medicago truncatula
Medtr0787s0010 5.0kb downstream 5.0kb downstream 5798 true scaffold0787: 1-5798 Medicago truncatula
Medtr0787s0010 5.0kb downstream 5.0kb downstream 124 false scaffold0787: 1-124 Medicago truncatula
Medtr0787s0010 10.0kb upstream 10.0kb upstream 6135 true scaffold0787: 125-6259 Medicago truncatula
Medtr0787s0010 10.0kb upstream 10.0kb upstream 461 false scaffold0787: 5799-6259 Medicago truncatula
Medtr0787s0010 10.0kb downstream 10.0kb downstream 5798 true scaffold0787: 1-5798 Medicago truncatula
Medtr0787s0010 10.0kb downstream 10.0kb downstream 124 false scaffold0787: 1-124 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632209 5273 Angiosperm Singleton cluster - no MSA
122270893 5265 Fabidae Singleton cluster - no MSA
124011566 5270 Rosid Singleton cluster - no MSA
123585465 5271 Pentapetalae Singleton cluster - no MSA
122620162 5272 Eudicot Singleton cluster - no MSA
120904313 5274 Embryophyte Singleton cluster - no MSA
122944968 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain