Gene : Medtr1077s0020 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR30258:SF2 - BACTERIOPHAGE N4 ADSORPTION PROTEIN B Description:  type II secretion system protein E
Genomic Order:  2 Name:  ? Medtr1077s0020
Secondary Identifier:  ? PAC:31101322
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1077s0020 0.5kb upstream 0.5kb upstream 1898 true scaffold1077: 766-2663 Medicago truncatula
Medtr1077s0020 0.5kb upstream 0.5kb upstream 500 false scaffold1077: 2164-2663 Medicago truncatula
Medtr1077s0020 0.5kb downstream 0.5kb downstream 1898 true scaffold1077: 266-2163 Medicago truncatula
Medtr1077s0020 0.5kb downstream 0.5kb downstream 500 false scaffold1077: 266-765 Medicago truncatula
Medtr1077s0020 1.0kb upstream 1.0kb upstream 2275 true scaffold1077: 766-3040 Medicago truncatula
Medtr1077s0020 1.0kb upstream 1.0kb upstream 877 false scaffold1077: 2164-3040 Medicago truncatula
Medtr1077s0020 1.0kb downstream 1.0kb downstream 2163 true scaffold1077: 1-2163 Medicago truncatula
Medtr1077s0020 1.0kb downstream 1.0kb downstream 765 false scaffold1077: 1-765 Medicago truncatula
Medtr1077s0020 2.0kb upstream 2.0kb upstream 2275 true scaffold1077: 766-3040 Medicago truncatula
Medtr1077s0020 2.0kb upstream 2.0kb upstream 877 false scaffold1077: 2164-3040 Medicago truncatula
Medtr1077s0020 2.0kb downstream 2.0kb downstream 2163 true scaffold1077: 1-2163 Medicago truncatula
Medtr1077s0020 2.0kb downstream 2.0kb downstream 765 false scaffold1077: 1-765 Medicago truncatula
Medtr1077s0020 5.0kb upstream 5.0kb upstream 2275 true scaffold1077: 766-3040 Medicago truncatula
Medtr1077s0020 5.0kb upstream 5.0kb upstream 877 false scaffold1077: 2164-3040 Medicago truncatula
Medtr1077s0020 5.0kb downstream 5.0kb downstream 2163 true scaffold1077: 1-2163 Medicago truncatula
Medtr1077s0020 5.0kb downstream 5.0kb downstream 765 false scaffold1077: 1-765 Medicago truncatula
Medtr1077s0020 10.0kb upstream 10.0kb upstream 2275 true scaffold1077: 766-3040 Medicago truncatula
Medtr1077s0020 10.0kb upstream 10.0kb upstream 877 false scaffold1077: 2164-3040 Medicago truncatula
Medtr1077s0020 10.0kb downstream 10.0kb downstream 2163 true scaffold1077: 1-2163 Medicago truncatula
Medtr1077s0020 10.0kb downstream 10.0kb downstream 765 false scaffold1077: 1-765 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632300 5273 Angiosperm Singleton cluster - no MSA
122270989 5265 Fabidae Singleton cluster - no MSA
124011657 5270 Rosid Singleton cluster - no MSA
123585556 5271 Pentapetalae Singleton cluster - no MSA
122620253 5272 Eudicot Singleton cluster - no MSA
120904404 5274 Embryophyte Singleton cluster - no MSA
122945056 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain