Gene : Medtr1054s0020 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF01614 - Bacterial transcriptional regulator (IclR) Description:  AMP-dependent synthetase and ligase
Genomic Order:  2 Name:  ? Medtr1054s0020
Secondary Identifier:  ? PAC:31084932
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1054s0020 0.5kb upstream 0.5kb upstream 2851 true scaffold1054: 1-2851 Medicago truncatula
Medtr1054s0020 0.5kb upstream 0.5kb upstream 361 false scaffold1054: 1-361 Medicago truncatula
Medtr1054s0020 0.5kb downstream 0.5kb downstream 2789 true scaffold1054: 362-3150 Medicago truncatula
Medtr1054s0020 0.5kb downstream 0.5kb downstream 299 false scaffold1054: 2852-3150 Medicago truncatula
Medtr1054s0020 1.0kb upstream 1.0kb upstream 2851 true scaffold1054: 1-2851 Medicago truncatula
Medtr1054s0020 1.0kb upstream 1.0kb upstream 361 false scaffold1054: 1-361 Medicago truncatula
Medtr1054s0020 1.0kb downstream 1.0kb downstream 2789 true scaffold1054: 362-3150 Medicago truncatula
Medtr1054s0020 1.0kb downstream 1.0kb downstream 299 false scaffold1054: 2852-3150 Medicago truncatula
Medtr1054s0020 2.0kb upstream 2.0kb upstream 2851 true scaffold1054: 1-2851 Medicago truncatula
Medtr1054s0020 2.0kb upstream 2.0kb upstream 361 false scaffold1054: 1-361 Medicago truncatula
Medtr1054s0020 2.0kb downstream 2.0kb downstream 2789 true scaffold1054: 362-3150 Medicago truncatula
Medtr1054s0020 2.0kb downstream 2.0kb downstream 299 false scaffold1054: 2852-3150 Medicago truncatula
Medtr1054s0020 5.0kb upstream 5.0kb upstream 2851 true scaffold1054: 1-2851 Medicago truncatula
Medtr1054s0020 5.0kb upstream 5.0kb upstream 361 false scaffold1054: 1-361 Medicago truncatula
Medtr1054s0020 5.0kb downstream 5.0kb downstream 2789 true scaffold1054: 362-3150 Medicago truncatula
Medtr1054s0020 5.0kb downstream 5.0kb downstream 299 false scaffold1054: 2852-3150 Medicago truncatula
Medtr1054s0020 10.0kb upstream 10.0kb upstream 2851 true scaffold1054: 1-2851 Medicago truncatula
Medtr1054s0020 10.0kb upstream 10.0kb upstream 361 false scaffold1054: 1-361 Medicago truncatula
Medtr1054s0020 10.0kb downstream 10.0kb downstream 2789 true scaffold1054: 362-3150 Medicago truncatula
Medtr1054s0020 10.0kb downstream 10.0kb downstream 299 false scaffold1054: 2852-3150 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632291 5273 Angiosperm Singleton cluster - no MSA
122270980 5265 Fabidae Singleton cluster - no MSA
124011648 5270 Rosid Singleton cluster - no MSA
123585547 5271 Pentapetalae Singleton cluster - no MSA
122620244 5272 Eudicot Singleton cluster - no MSA
120904395 5274 Embryophyte Singleton cluster - no MSA
122945048 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain