Gene : Medtr0980s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF05954//PF12796 - Phage late control gene D protein (GPD) (Phage_GPD) // Ankyrin repeats (3 copies) (Ank_2) Description:  VgrG protein; type VI secretion system component, putative
Genomic Order:  1 Name:  ? Medtr0980s0010
Secondary Identifier:  ? PAC:31076884
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula LIPASYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6803 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0980s0010 0.5kb upstream 0.5kb upstream 3681 true scaffold0980: 1-3681 Medicago truncatula
Medtr0980s0010 0.5kb upstream 0.5kb upstream 22 false scaffold0980: 1-22 Medicago truncatula
Medtr0980s0010 0.5kb downstream 0.5kb downstream 3674 true scaffold0980: 23-3696 Medicago truncatula
Medtr0980s0010 0.5kb downstream 0.5kb downstream 15 false scaffold0980: 3682-3696 Medicago truncatula
Medtr0980s0010 1.0kb upstream 1.0kb upstream 3681 true scaffold0980: 1-3681 Medicago truncatula
Medtr0980s0010 1.0kb upstream 1.0kb upstream 22 false scaffold0980: 1-22 Medicago truncatula
Medtr0980s0010 1.0kb downstream 1.0kb downstream 3674 true scaffold0980: 23-3696 Medicago truncatula
Medtr0980s0010 1.0kb downstream 1.0kb downstream 15 false scaffold0980: 3682-3696 Medicago truncatula
Medtr0980s0010 2.0kb upstream 2.0kb upstream 3681 true scaffold0980: 1-3681 Medicago truncatula
Medtr0980s0010 2.0kb upstream 2.0kb upstream 22 false scaffold0980: 1-22 Medicago truncatula
Medtr0980s0010 2.0kb downstream 2.0kb downstream 3674 true scaffold0980: 23-3696 Medicago truncatula
Medtr0980s0010 2.0kb downstream 2.0kb downstream 15 false scaffold0980: 3682-3696 Medicago truncatula
Medtr0980s0010 5.0kb upstream 5.0kb upstream 3681 true scaffold0980: 1-3681 Medicago truncatula
Medtr0980s0010 5.0kb upstream 5.0kb upstream 22 false scaffold0980: 1-22 Medicago truncatula
Medtr0980s0010 5.0kb downstream 5.0kb downstream 3674 true scaffold0980: 23-3696 Medicago truncatula
Medtr0980s0010 5.0kb downstream 5.0kb downstream 15 false scaffold0980: 3682-3696 Medicago truncatula
Medtr0980s0010 10.0kb upstream 10.0kb upstream 3681 true scaffold0980: 1-3681 Medicago truncatula
Medtr0980s0010 10.0kb upstream 10.0kb upstream 22 false scaffold0980: 1-22 Medicago truncatula
Medtr0980s0010 10.0kb downstream 10.0kb downstream 3674 true scaffold0980: 23-3696 Medicago truncatula
Medtr0980s0010 10.0kb downstream 10.0kb downstream 15 false scaffold0980: 3682-3696 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632271 5273 Angiosperm Singleton cluster - no MSA
122270957 5265 Fabidae Singleton cluster - no MSA
124011628 5270 Rosid Singleton cluster - no MSA
123585527 5271 Pentapetalae Singleton cluster - no MSA
122620224 5272 Eudicot Singleton cluster - no MSA
120904375 5274 Embryophyte Singleton cluster - no MSA
122945030 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain