Gene : Medtr0167s0060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11599:SF16 - PROTEASOME SUBUNIT ALPHA TYPE-2 Description:  20S proteasome alpha subunit E1
Genomic Order:  2 Name:  ? Medtr0167s0060
Secondary Identifier:  ? PAC:31084813
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0167s0060 0.5kb upstream 0.5kb upstream 7391 true scaffold0167: 27798-35188 Medicago truncatula
Medtr0167s0060 0.5kb upstream 0.5kb upstream 500 false scaffold0167: 34689-35188 Medicago truncatula
Medtr0167s0060 0.5kb downstream 0.5kb downstream 7391 true scaffold0167: 27298-34688 Medicago truncatula
Medtr0167s0060 0.5kb downstream 0.5kb downstream 500 false scaffold0167: 27298-27797 Medicago truncatula
Medtr0167s0060 1.0kb upstream 1.0kb upstream 7891 true scaffold0167: 27798-35688 Medicago truncatula
Medtr0167s0060 1.0kb upstream 1.0kb upstream 1000 false scaffold0167: 34689-35688 Medicago truncatula
Medtr0167s0060 1.0kb downstream 1.0kb downstream 7891 true scaffold0167: 26798-34688 Medicago truncatula
Medtr0167s0060 1.0kb downstream 1.0kb downstream 1000 false scaffold0167: 26798-27797 Medicago truncatula
Medtr0167s0060 2.0kb upstream 2.0kb upstream 8496 true scaffold0167: 27798-36293 Medicago truncatula
Medtr0167s0060 2.0kb upstream 2.0kb upstream 1605 false scaffold0167: 34689-36293 Medicago truncatula
Medtr0167s0060 2.0kb downstream 2.0kb downstream 8891 true scaffold0167: 25798-34688 Medicago truncatula
Medtr0167s0060 2.0kb downstream 2.0kb downstream 2000 false scaffold0167: 25798-27797 Medicago truncatula
Medtr0167s0060 5.0kb upstream 5.0kb upstream 8496 true scaffold0167: 27798-36293 Medicago truncatula
Medtr0167s0060 5.0kb upstream 5.0kb upstream 1605 false scaffold0167: 34689-36293 Medicago truncatula
Medtr0167s0060 5.0kb downstream 5.0kb downstream 11891 true scaffold0167: 22798-34688 Medicago truncatula
Medtr0167s0060 5.0kb downstream 5.0kb downstream 5000 false scaffold0167: 22798-27797 Medicago truncatula
Medtr0167s0060 10.0kb upstream 10.0kb upstream 8496 true scaffold0167: 27798-36293 Medicago truncatula
Medtr0167s0060 10.0kb upstream 10.0kb upstream 1605 false scaffold0167: 34689-36293 Medicago truncatula
Medtr0167s0060 10.0kb downstream 10.0kb downstream 16891 true scaffold0167: 17798-34688 Medicago truncatula
Medtr0167s0060 10.0kb downstream 10.0kb downstream 10000 false scaffold0167: 17798-27797 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026291 5273 Angiosperm View MSA
122310573 5265 Fabidae View MSA
124069190 5270 Rosid View MSA
123746972 5271 Pentapetalae View MSA
122795211 5272 Eudicot View MSA
121350421 5274 Embryophyte View MSA
123426464 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.902        
cufflinks 5.387        
cufflinks 5.44        
cufflinks 3.342       Low
cufflinks 9.83       High
cufflinks 2.639       Low
cufflinks 6.617        
cufflinks 5.139        
cufflinks 6.219        

0 Strain