Gene : Medtr0154s0020 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR24361:SF334 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 19-RELATED Description:  MAP3K-like kinase
Genomic Order:  2 Name:  ? Medtr0154s0020
Secondary Identifier:  ? PAC:31076799
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0154s0020 0.5kb upstream 0.5kb upstream 1637 true scaffold0154: 14171-15807 Medicago truncatula
Medtr0154s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0154: 15308-15807 Medicago truncatula
Medtr0154s0020 0.5kb downstream 0.5kb downstream 1637 true scaffold0154: 13671-15307 Medicago truncatula
Medtr0154s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0154: 13671-14170 Medicago truncatula
Medtr0154s0020 1.0kb upstream 1.0kb upstream 2137 true scaffold0154: 14171-16307 Medicago truncatula
Medtr0154s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0154: 15308-16307 Medicago truncatula
Medtr0154s0020 1.0kb downstream 1.0kb downstream 2137 true scaffold0154: 13171-15307 Medicago truncatula
Medtr0154s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0154: 13171-14170 Medicago truncatula
Medtr0154s0020 2.0kb upstream 2.0kb upstream 3137 true scaffold0154: 14171-17307 Medicago truncatula
Medtr0154s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0154: 15308-17307 Medicago truncatula
Medtr0154s0020 2.0kb downstream 2.0kb downstream 3137 true scaffold0154: 12171-15307 Medicago truncatula
Medtr0154s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0154: 12171-14170 Medicago truncatula
Medtr0154s0020 5.0kb upstream 5.0kb upstream 6137 true scaffold0154: 14171-20307 Medicago truncatula
Medtr0154s0020 5.0kb upstream 5.0kb upstream 5000 false scaffold0154: 15308-20307 Medicago truncatula
Medtr0154s0020 5.0kb downstream 5.0kb downstream 6137 true scaffold0154: 9171-15307 Medicago truncatula
Medtr0154s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0154: 9171-14170 Medicago truncatula
Medtr0154s0020 10.0kb upstream 10.0kb upstream 11137 true scaffold0154: 14171-25307 Medicago truncatula
Medtr0154s0020 10.0kb upstream 10.0kb upstream 10000 false scaffold0154: 15308-25307 Medicago truncatula
Medtr0154s0020 10.0kb downstream 10.0kb downstream 11137 true scaffold0154: 4171-15307 Medicago truncatula
Medtr0154s0020 10.0kb downstream 10.0kb downstream 10000 false scaffold0154: 4171-14170 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310266 5265 Fabidae View MSA
124073880 5270 Rosid View MSA
123753521 5271 Pentapetalae View MSA
122797928 5272 Eudicot View MSA
122051434 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.331        
cufflinks 0.062     Low Low
cufflinks 0.164        
cufflinks 0.398        
cufflinks 0.144        
cufflinks 0.581        
cufflinks 0.615        
cufflinks 0.093        
cufflinks 2.952       High

0 Strain