Gene : Medtr0157s0070 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR11700//PTHR11700:SF10 - 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER Description:  40S ribosomal protein S20-2
Genomic Order:  3 Name:  ? Medtr0157s0070
Secondary Identifier:  ? PAC:31061746
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0157s0070 0.5kb upstream 0.5kb upstream 2915 true scaffold0157: 24091-27005 Medicago truncatula
Medtr0157s0070 0.5kb upstream 0.5kb upstream 500 false scaffold0157: 26506-27005 Medicago truncatula
Medtr0157s0070 0.5kb downstream 0.5kb downstream 2915 true scaffold0157: 23591-26505 Medicago truncatula
Medtr0157s0070 0.5kb downstream 0.5kb downstream 500 false scaffold0157: 23591-24090 Medicago truncatula
Medtr0157s0070 1.0kb upstream 1.0kb upstream 3415 true scaffold0157: 24091-27505 Medicago truncatula
Medtr0157s0070 1.0kb upstream 1.0kb upstream 1000 false scaffold0157: 26506-27505 Medicago truncatula
Medtr0157s0070 1.0kb downstream 1.0kb downstream 3415 true scaffold0157: 23091-26505 Medicago truncatula
Medtr0157s0070 1.0kb downstream 1.0kb downstream 1000 false scaffold0157: 23091-24090 Medicago truncatula
Medtr0157s0070 2.0kb upstream 2.0kb upstream 4415 true scaffold0157: 24091-28505 Medicago truncatula
Medtr0157s0070 2.0kb upstream 2.0kb upstream 2000 false scaffold0157: 26506-28505 Medicago truncatula
Medtr0157s0070 2.0kb downstream 2.0kb downstream 4415 true scaffold0157: 22091-26505 Medicago truncatula
Medtr0157s0070 2.0kb downstream 2.0kb downstream 2000 false scaffold0157: 22091-24090 Medicago truncatula
Medtr0157s0070 5.0kb upstream 5.0kb upstream 7415 true scaffold0157: 24091-31505 Medicago truncatula
Medtr0157s0070 5.0kb upstream 5.0kb upstream 5000 false scaffold0157: 26506-31505 Medicago truncatula
Medtr0157s0070 5.0kb downstream 5.0kb downstream 7415 true scaffold0157: 19091-26505 Medicago truncatula
Medtr0157s0070 5.0kb downstream 5.0kb downstream 5000 false scaffold0157: 19091-24090 Medicago truncatula
Medtr0157s0070 10.0kb upstream 10.0kb upstream 12415 true scaffold0157: 24091-36505 Medicago truncatula
Medtr0157s0070 10.0kb upstream 10.0kb upstream 10000 false scaffold0157: 26506-36505 Medicago truncatula
Medtr0157s0070 10.0kb downstream 10.0kb downstream 12415 true scaffold0157: 14091-26505 Medicago truncatula
Medtr0157s0070 10.0kb downstream 10.0kb downstream 10000 false scaffold0157: 14091-24090 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309868 5265 Fabidae View MSA
124068920 5270 Rosid View MSA
123743222 5271 Pentapetalae View MSA
122791885 5272 Eudicot View MSA
122044190 5273 Angiosperm View MSA
121349858 5274 Embryophyte View MSA
123426171 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.471       Low
cufflinks 0.414       Low
cufflinks 0.55        
cufflinks 1.143       High
cufflinks 0.788        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.247       High
cufflinks 0.602        
cufflinks 1.058        

0 Strain