Gene : Medtr0157s0060 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  polygalacturonase/glycoside hydrolase family protein
Genomic Order:  2 Name:  ? Medtr0157s0060
Secondary Identifier:  ? PAC:31061748
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0157s0060 0.5kb upstream 0.5kb upstream 5850 true scaffold0157: 15247-21096 Medicago truncatula
Medtr0157s0060 0.5kb upstream 0.5kb upstream 500 false scaffold0157: 20597-21096 Medicago truncatula
Medtr0157s0060 0.5kb downstream 0.5kb downstream 5850 true scaffold0157: 14747-20596 Medicago truncatula
Medtr0157s0060 0.5kb downstream 0.5kb downstream 500 false scaffold0157: 14747-15246 Medicago truncatula
Medtr0157s0060 1.0kb upstream 1.0kb upstream 6350 true scaffold0157: 15247-21596 Medicago truncatula
Medtr0157s0060 1.0kb upstream 1.0kb upstream 1000 false scaffold0157: 20597-21596 Medicago truncatula
Medtr0157s0060 1.0kb downstream 1.0kb downstream 6350 true scaffold0157: 14247-20596 Medicago truncatula
Medtr0157s0060 1.0kb downstream 1.0kb downstream 1000 false scaffold0157: 14247-15246 Medicago truncatula
Medtr0157s0060 2.0kb upstream 2.0kb upstream 7350 true scaffold0157: 15247-22596 Medicago truncatula
Medtr0157s0060 2.0kb upstream 2.0kb upstream 2000 false scaffold0157: 20597-22596 Medicago truncatula
Medtr0157s0060 2.0kb downstream 2.0kb downstream 7350 true scaffold0157: 13247-20596 Medicago truncatula
Medtr0157s0060 2.0kb downstream 2.0kb downstream 2000 false scaffold0157: 13247-15246 Medicago truncatula
Medtr0157s0060 5.0kb upstream 5.0kb upstream 10350 true scaffold0157: 15247-25596 Medicago truncatula
Medtr0157s0060 5.0kb upstream 5.0kb upstream 5000 false scaffold0157: 20597-25596 Medicago truncatula
Medtr0157s0060 5.0kb downstream 5.0kb downstream 10350 true scaffold0157: 10247-20596 Medicago truncatula
Medtr0157s0060 5.0kb downstream 5.0kb downstream 5000 false scaffold0157: 10247-15246 Medicago truncatula
Medtr0157s0060 10.0kb upstream 10.0kb upstream 15350 true scaffold0157: 15247-30596 Medicago truncatula
Medtr0157s0060 10.0kb upstream 10.0kb upstream 10000 false scaffold0157: 20597-30596 Medicago truncatula
Medtr0157s0060 10.0kb downstream 10.0kb downstream 15350 true scaffold0157: 5247-20596 Medicago truncatula
Medtr0157s0060 10.0kb downstream 10.0kb downstream 10000 false scaffold0157: 5247-15246 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain