Gene : Medtr0147s0080 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22999:SF19 - PHOX (PX) DOMAIN-CONTAINING PROTEIN Description:  sorting nexin carboxy-terminal protein
Genomic Order:  8 Name:  ? Medtr0147s0080
Secondary Identifier:  ? PAC:31100858
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0147s0080 0.5kb upstream 0.5kb upstream 10964 true scaffold0147: 27596-38559 Medicago truncatula
Medtr0147s0080 0.5kb upstream 0.5kb upstream 500 false scaffold0147: 38060-38559 Medicago truncatula
Medtr0147s0080 0.5kb downstream 0.5kb downstream 10964 true scaffold0147: 27096-38059 Medicago truncatula
Medtr0147s0080 0.5kb downstream 0.5kb downstream 500 false scaffold0147: 27096-27595 Medicago truncatula
Medtr0147s0080 1.0kb upstream 1.0kb upstream 11464 true scaffold0147: 27596-39059 Medicago truncatula
Medtr0147s0080 1.0kb upstream 1.0kb upstream 1000 false scaffold0147: 38060-39059 Medicago truncatula
Medtr0147s0080 1.0kb downstream 1.0kb downstream 11464 true scaffold0147: 26596-38059 Medicago truncatula
Medtr0147s0080 1.0kb downstream 1.0kb downstream 1000 false scaffold0147: 26596-27595 Medicago truncatula
Medtr0147s0080 2.0kb upstream 2.0kb upstream 12464 true scaffold0147: 27596-40059 Medicago truncatula
Medtr0147s0080 2.0kb upstream 2.0kb upstream 2000 false scaffold0147: 38060-40059 Medicago truncatula
Medtr0147s0080 2.0kb downstream 2.0kb downstream 12464 true scaffold0147: 25596-38059 Medicago truncatula
Medtr0147s0080 2.0kb downstream 2.0kb downstream 2000 false scaffold0147: 25596-27595 Medicago truncatula
Medtr0147s0080 5.0kb upstream 5.0kb upstream 12697 true scaffold0147: 27596-40292 Medicago truncatula
Medtr0147s0080 5.0kb upstream 5.0kb upstream 2233 false scaffold0147: 38060-40292 Medicago truncatula
Medtr0147s0080 5.0kb downstream 5.0kb downstream 15464 true scaffold0147: 22596-38059 Medicago truncatula
Medtr0147s0080 5.0kb downstream 5.0kb downstream 5000 false scaffold0147: 22596-27595 Medicago truncatula
Medtr0147s0080 10.0kb upstream 10.0kb upstream 12697 true scaffold0147: 27596-40292 Medicago truncatula
Medtr0147s0080 10.0kb upstream 10.0kb upstream 2233 false scaffold0147: 38060-40292 Medicago truncatula
Medtr0147s0080 10.0kb downstream 10.0kb downstream 20464 true scaffold0147: 17596-38059 Medicago truncatula
Medtr0147s0080 10.0kb downstream 10.0kb downstream 10000 false scaffold0147: 17596-27595 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299063 5265 Fabidae View MSA
124061422 5270 Rosid View MSA
123739237 5271 Pentapetalae View MSA
122786426 5272 Eudicot View MSA
122041700 5273 Angiosperm View MSA
121349142 5274 Embryophyte View MSA
123426415 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.341        
cufflinks 0.728        
cufflinks 0.783        
cufflinks 0.147       Low
cufflinks 0.671        
cufflinks 0.072     Low Low
cufflinks 0.369        
cufflinks 0.618        
cufflinks 0.298        

0 Strain