Gene : Medtr0172s0030 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA Description:  RNA polymerase sigma factor
Genomic Order:  3 Name:  ? Medtr0172s0030
Secondary Identifier:  ? PAC:31076871
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0172s0030 0.5kb upstream 0.5kb upstream 5643 true scaffold0172: 20750-26392 Medicago truncatula
Medtr0172s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0172: 25893-26392 Medicago truncatula
Medtr0172s0030 0.5kb downstream 0.5kb downstream 5643 true scaffold0172: 20250-25892 Medicago truncatula
Medtr0172s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0172: 20250-20749 Medicago truncatula
Medtr0172s0030 1.0kb upstream 1.0kb upstream 6143 true scaffold0172: 20750-26892 Medicago truncatula
Medtr0172s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0172: 25893-26892 Medicago truncatula
Medtr0172s0030 1.0kb downstream 1.0kb downstream 6143 true scaffold0172: 19750-25892 Medicago truncatula
Medtr0172s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0172: 19750-20749 Medicago truncatula
Medtr0172s0030 2.0kb upstream 2.0kb upstream 7143 true scaffold0172: 20750-27892 Medicago truncatula
Medtr0172s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0172: 25893-27892 Medicago truncatula
Medtr0172s0030 2.0kb downstream 2.0kb downstream 7143 true scaffold0172: 18750-25892 Medicago truncatula
Medtr0172s0030 2.0kb downstream 2.0kb downstream 2000 false scaffold0172: 18750-20749 Medicago truncatula
Medtr0172s0030 5.0kb upstream 5.0kb upstream 10143 true scaffold0172: 20750-30892 Medicago truncatula
Medtr0172s0030 5.0kb upstream 5.0kb upstream 5000 false scaffold0172: 25893-30892 Medicago truncatula
Medtr0172s0030 5.0kb downstream 5.0kb downstream 10143 true scaffold0172: 15750-25892 Medicago truncatula
Medtr0172s0030 5.0kb downstream 5.0kb downstream 5000 false scaffold0172: 15750-20749 Medicago truncatula
Medtr0172s0030 10.0kb upstream 10.0kb upstream 14682 true scaffold0172: 20750-35431 Medicago truncatula
Medtr0172s0030 10.0kb upstream 10.0kb upstream 9539 false scaffold0172: 25893-35431 Medicago truncatula
Medtr0172s0030 10.0kb downstream 10.0kb downstream 15143 true scaffold0172: 10750-25892 Medicago truncatula
Medtr0172s0030 10.0kb downstream 10.0kb downstream 10000 false scaffold0172: 10750-20749 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301612 5265 Fabidae View MSA
124062387 5270 Rosid View MSA
123751324 5271 Pentapetalae View MSA
122790966 5272 Eudicot View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.218        
cufflinks 17.637     High High
cufflinks 12.309     High  
cufflinks 0.372       Low
cufflinks 19.651     High High
cufflinks 0.163       Low
cufflinks 1.213        
cufflinks 15.309     High  
cufflinks 0.682        

0 Strain