Gene : Medtr0194s0050 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11514:SF61 - TRANSCRIPTION FACTOR FAMA Description:  transcription factor
Genomic Order:  4 Name:  ? Medtr0194s0050
Secondary Identifier:  ? PAC:31061798
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0194s0050 0.5kb upstream 0.5kb upstream 2122 true scaffold0194: 25193-27314 Medicago truncatula
Medtr0194s0050 0.5kb upstream 0.5kb upstream 500 false scaffold0194: 25193-25692 Medicago truncatula
Medtr0194s0050 0.5kb downstream 0.5kb downstream 2122 true scaffold0194: 25693-27814 Medicago truncatula
Medtr0194s0050 0.5kb downstream 0.5kb downstream 500 false scaffold0194: 27315-27814 Medicago truncatula
Medtr0194s0050 1.0kb upstream 1.0kb upstream 2622 true scaffold0194: 24693-27314 Medicago truncatula
Medtr0194s0050 1.0kb upstream 1.0kb upstream 1000 false scaffold0194: 24693-25692 Medicago truncatula
Medtr0194s0050 1.0kb downstream 1.0kb downstream 2622 true scaffold0194: 25693-28314 Medicago truncatula
Medtr0194s0050 1.0kb downstream 1.0kb downstream 1000 false scaffold0194: 27315-28314 Medicago truncatula
Medtr0194s0050 2.0kb upstream 2.0kb upstream 3622 true scaffold0194: 23693-27314 Medicago truncatula
Medtr0194s0050 2.0kb upstream 2.0kb upstream 2000 false scaffold0194: 23693-25692 Medicago truncatula
Medtr0194s0050 2.0kb downstream 2.0kb downstream 3622 true scaffold0194: 25693-29314 Medicago truncatula
Medtr0194s0050 2.0kb downstream 2.0kb downstream 2000 false scaffold0194: 27315-29314 Medicago truncatula
Medtr0194s0050 5.0kb upstream 5.0kb upstream 6622 true scaffold0194: 20693-27314 Medicago truncatula
Medtr0194s0050 5.0kb upstream 5.0kb upstream 5000 false scaffold0194: 20693-25692 Medicago truncatula
Medtr0194s0050 5.0kb downstream 5.0kb downstream 6574 true scaffold0194: 25693-32266 Medicago truncatula
Medtr0194s0050 5.0kb downstream 5.0kb downstream 4952 false scaffold0194: 27315-32266 Medicago truncatula
Medtr0194s0050 10.0kb upstream 10.0kb upstream 11622 true scaffold0194: 15693-27314 Medicago truncatula
Medtr0194s0050 10.0kb upstream 10.0kb upstream 10000 false scaffold0194: 15693-25692 Medicago truncatula
Medtr0194s0050 10.0kb downstream 10.0kb downstream 6574 true scaffold0194: 25693-32266 Medicago truncatula
Medtr0194s0050 10.0kb downstream 10.0kb downstream 4952 false scaffold0194: 27315-32266 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300462 5265 Fabidae View MSA
124063220 5270 Rosid View MSA
123749503 5271 Pentapetalae View MSA
122789750 5272 Eudicot View MSA
122051154 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.301        
cufflinks 10.735     High  
cufflinks 13.251     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 10.167        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 12.583     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain