Gene : Medtr0288s0040 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11468:SF8 - ALPHA-GLUCAN PHOSPHORYLASE 1 Description:  glycogen/starch/alpha-glucan phosphorylase family protein
Genomic Order:  3 Name:  ? Medtr0288s0040
Secondary Identifier:  ? PAC:31069358
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5941 Medicago truncatula pathologic  
Mtruncatula PWY-7238 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0288s0040 0.5kb upstream 0.5kb upstream 7905 true scaffold0288: 7132-15036 Medicago truncatula
Medtr0288s0040 0.5kb upstream 0.5kb upstream 500 false scaffold0288: 14537-15036 Medicago truncatula
Medtr0288s0040 0.5kb downstream 0.5kb downstream 7905 true scaffold0288: 6632-14536 Medicago truncatula
Medtr0288s0040 0.5kb downstream 0.5kb downstream 500 false scaffold0288: 6632-7131 Medicago truncatula
Medtr0288s0040 1.0kb upstream 1.0kb upstream 8405 true scaffold0288: 7132-15536 Medicago truncatula
Medtr0288s0040 1.0kb upstream 1.0kb upstream 1000 false scaffold0288: 14537-15536 Medicago truncatula
Medtr0288s0040 1.0kb downstream 1.0kb downstream 8405 true scaffold0288: 6132-14536 Medicago truncatula
Medtr0288s0040 1.0kb downstream 1.0kb downstream 1000 false scaffold0288: 6132-7131 Medicago truncatula
Medtr0288s0040 2.0kb upstream 2.0kb upstream 9405 true scaffold0288: 7132-16536 Medicago truncatula
Medtr0288s0040 2.0kb upstream 2.0kb upstream 2000 false scaffold0288: 14537-16536 Medicago truncatula
Medtr0288s0040 2.0kb downstream 2.0kb downstream 9405 true scaffold0288: 5132-14536 Medicago truncatula
Medtr0288s0040 2.0kb downstream 2.0kb downstream 2000 false scaffold0288: 5132-7131 Medicago truncatula
Medtr0288s0040 5.0kb upstream 5.0kb upstream 12405 true scaffold0288: 7132-19536 Medicago truncatula
Medtr0288s0040 5.0kb upstream 5.0kb upstream 5000 false scaffold0288: 14537-19536 Medicago truncatula
Medtr0288s0040 5.0kb downstream 5.0kb downstream 12405 true scaffold0288: 2132-14536 Medicago truncatula
Medtr0288s0040 5.0kb downstream 5.0kb downstream 5000 false scaffold0288: 2132-7131 Medicago truncatula
Medtr0288s0040 10.0kb upstream 10.0kb upstream 15394 true scaffold0288: 7132-22525 Medicago truncatula
Medtr0288s0040 10.0kb upstream 10.0kb upstream 7989 false scaffold0288: 14537-22525 Medicago truncatula
Medtr0288s0040 10.0kb downstream 10.0kb downstream 14536 true scaffold0288: 1-14536 Medicago truncatula
Medtr0288s0040 10.0kb downstream 10.0kb downstream 7131 false scaffold0288: 1-7131 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299436 5265 Fabidae View MSA
124071447 5270 Rosid View MSA
123744201 5271 Pentapetalae View MSA
122788131 5272 Eudicot View MSA
122045780 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.093     High High
cufflinks 4.061        
cufflinks 4.131        
cufflinks 0.713       Low
cufflinks 6.211        
cufflinks 0.645       Low
cufflinks 2.197        
cufflinks 3.944        
cufflinks 4.017        

0 Strain