Gene : Medtr0280s0030 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23240//PTHR23240:SF9 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED Description:  DNA repair metallo-beta-lactamase family protein
Genomic Order:  2 Name:  ? Medtr0280s0030
Secondary Identifier:  ? PAC:31092122
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0280s0030 0.5kb upstream 0.5kb upstream 3255 true scaffold0280: 8491-11745 Medicago truncatula
Medtr0280s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0280: 8491-8990 Medicago truncatula
Medtr0280s0030 0.5kb downstream 0.5kb downstream 3255 true scaffold0280: 8991-12245 Medicago truncatula
Medtr0280s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0280: 11746-12245 Medicago truncatula
Medtr0280s0030 1.0kb upstream 1.0kb upstream 3755 true scaffold0280: 7991-11745 Medicago truncatula
Medtr0280s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0280: 7991-8990 Medicago truncatula
Medtr0280s0030 1.0kb downstream 1.0kb downstream 3755 true scaffold0280: 8991-12745 Medicago truncatula
Medtr0280s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0280: 11746-12745 Medicago truncatula
Medtr0280s0030 2.0kb upstream 2.0kb upstream 4755 true scaffold0280: 6991-11745 Medicago truncatula
Medtr0280s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0280: 6991-8990 Medicago truncatula
Medtr0280s0030 2.0kb downstream 2.0kb downstream 4755 true scaffold0280: 8991-13745 Medicago truncatula
Medtr0280s0030 2.0kb downstream 2.0kb downstream 2000 false scaffold0280: 11746-13745 Medicago truncatula
Medtr0280s0030 5.0kb upstream 5.0kb upstream 7755 true scaffold0280: 3991-11745 Medicago truncatula
Medtr0280s0030 5.0kb upstream 5.0kb upstream 5000 false scaffold0280: 3991-8990 Medicago truncatula
Medtr0280s0030 5.0kb downstream 5.0kb downstream 7755 true scaffold0280: 8991-16745 Medicago truncatula
Medtr0280s0030 5.0kb downstream 5.0kb downstream 5000 false scaffold0280: 11746-16745 Medicago truncatula
Medtr0280s0030 10.0kb upstream 10.0kb upstream 11745 true scaffold0280: 1-11745 Medicago truncatula
Medtr0280s0030 10.0kb upstream 10.0kb upstream 8990 false scaffold0280: 1-8990 Medicago truncatula
Medtr0280s0030 10.0kb downstream 10.0kb downstream 12755 true scaffold0280: 8991-21745 Medicago truncatula
Medtr0280s0030 10.0kb downstream 10.0kb downstream 10000 false scaffold0280: 11746-21745 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297277 5265 Fabidae View MSA
124073622 5270 Rosid View MSA
123741645 5271 Pentapetalae View MSA
122793173 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.057     Low  
cufflinks 0.069        
cufflinks 0.047     Low  
cufflinks 0.069        
cufflinks 0.069        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.21       High
cufflinks 0.039     Low Low
cufflinks 0.253       High

0 Strain